Compositional study of plasmalogens in clam (Corbicula fluminea) by TiO2/KCC-1 extraction, enzymatic purification, and lipidomics analysis

Author(s):  
Mengna Zhang ◽  
Gongshuai Song ◽  
Qinchao Zhu ◽  
Qiaoling Zhao ◽  
Xiaodi Zhang ◽  
...  
2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Tongqing Zhang ◽  
Jiawen Yin ◽  
Shengkai Tang ◽  
Daming Li ◽  
Xiankun Gu ◽  
...  

AbstractThe Asian Clam (Corbicula fluminea) is a valuable commercial and medicinal bivalve, which is widely distributed in East and Southeast Asia. As a natural nutrient source, the clam is rich in protein, amino acids, and microelements. The genome of C. fluminea has not yet been characterized; therefore, genome-assisted breeding and improvements cannot yet be implemented. In this work, we present a de novo chromosome-scale genome assembly of C. fluminea using PacBio and Hi-C sequencing technologies. The assembled genome comprised 4728 contigs, with a contig N50 of 521.06 Kb, and 1,215 scaffolds with a scaffold N50 of 70.62 Mb. More than 1.51 Gb (99.17%) of genomic sequences were anchored to 18 chromosomes, of which 1.40 Gb (92.81%) of genomic sequences were ordered and oriented. The genome contains 38,841 coding genes, 32,591 (83.91%) of which were annotated in at least one functional database. Compared with related species, C. fluminea had 851 expanded gene families and 191 contracted gene families. The phylogenetic tree showed that C. fluminea diverged from Ruditapes philippinarum, ~ 228.89 million years ago (Mya), and the genomes of C. fluminea and R. philippinarum shared 244 syntenic blocks. Additionally, we identified 2 MITF members and 99 NLRP members in C. fluminea genome. The high-quality and chromosomal Asian Clam genome will be a valuable resource for a range of development and breeding studies of C. fluminea in future research.


Author(s):  
Neil E. Coughlan ◽  
Ross N. Cuthbert ◽  
Eoghan M. Cunningham ◽  
Stephen Potts ◽  
Diarmuid McSweeney ◽  
...  

AbstractSuppression of established populations of invasive alien species can be a complex and expensive process, which is frequently unsuccessful. The Asian clam, Corbicula fluminea (Müller, 1774), is considered a high impact invader that can adversely alter freshwater ecosystems and decrease their socioeconomic value. To date, C. fluminea continues to spread and persist within freshwater environments worldwide, despite repeated management attempts to prevent dispersal and suppress established populations. As extensive C. fluminea beds can often become exposed during low-water conditions, the direct application of hot or cold thermal shock treatments has been proposed as suitable mechanism for their control. Further, mechanical substrate disturbance may enhance the efficacy of thermal shock treatments by facilitating exposures to multiple layers of buried clams. In the present study, we advanced these methods by assessing combined applications of both hot and cold thermal shock treatments for control of C. fluminea, using steam spray (≥100 °C; 350 kPa), low- or high-intensity open-flame burns (~1000 °C) and dry ice (−78 °C). In a direct comparison of raking combined with hot thermal shock applications, both steam and high-intensity open-flame treatments tended to be most effective, especially following multiple applications. In addition, when hot thermal treatments are followed by a final cold shock (i.e. dry ice), steam treatments tended to be most effective. Further, when dry ice was applied either alone or prior to an application of a hot shock treatment, substantial if not complete C. fluminea mortality was observed. Overall, this study demonstrated that combined applications of hot and cold thermal shock treatments, applied following the disruption of the substrate, can substantially increase C. fluminea mortality compared to separate hot or cold treatments.


SpringerPlus ◽  
2014 ◽  
Vol 3 (1) ◽  
pp. 455 ◽  
Author(s):  
Bai-cai Xiao ◽  
Er-chao Li ◽  
Zhen-yu Du ◽  
Run-lan Jiang ◽  
Li-qiao Chen ◽  
...  

2013 ◽  
Vol 4 (4) ◽  
pp. 539 ◽  
Author(s):  
Ningbo Liao ◽  
Shiguo Chen ◽  
Xingqian Ye ◽  
Jianjun Zhong ◽  
Nian Wu ◽  
...  

2016 ◽  
Vol 76 (3) ◽  
pp. 718-725
Author(s):  
T. C. L. Silveira ◽  
A. M. S. Gama ◽  
T. P. Alves ◽  
N. F. Fontoura

Abstract This study aimed to model the habitat suitability for an invasive clam Corbicula fluminea in a coastal shallow lagoon in the southern Neotropical region (–30.22, –50.55). The lagoon (19km2, maximum deep 2.5m) was sampled with an Ekman dredge in an orthogonal matrix comprising 84 points. At each sampling point, were obtained environmental descriptors as depth, organic matter content (OMC), average granulometry (Avgran), and the percentage of sand (Pcsand). Prediction performance of Generalized Linear Models (GLM), Generalized Additive Models (GAM) and Boosted Regression Tree (BRT) were compared. Also, niche overlapping with other native clam species (Castalia martensi, Neocorbicula limosa and Anodontites trapesialis) was examined. A BRT model with 1400 trees was selected as the best model, with cross-validated correlation of 0.82. The relative contributions of predictors were Pcsand-42.6%, OMC-35.8%, Avgran-10.9% and Depth-10.8%. Were identified that C. fluminea occur mainly in sandy sediments with few organic matter, in shallow areas nor by the shore. The PCA showed a wide niche overlap with the native clam species C. martensi, N. limosa and A. trapesialis.


1999 ◽  
Vol 14 (4) ◽  
pp. 551-552 ◽  
Author(s):  
Néstor J. Cazzaniga ◽  
Cristian Pérez

2017 ◽  
Vol 33 (3) ◽  
pp. 234-248 ◽  
Author(s):  
Whitney Hassett ◽  
Stephen M. Bollens ◽  
Timothy D. Counihan ◽  
Gretchen Rollwagen-Bollens ◽  
Julie Zimmerman ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document