scholarly journals μSPIM Toolset: A software platform for selective plane illumination microscopy

2021 ◽  
Vol 347 ◽  
pp. 108952
Author(s):  
Daniel Saska ◽  
Paul Pichler ◽  
Chen Qian ◽  
Christopher L. Buckley ◽  
Leon Lagnado
2019 ◽  
Vol 12 ◽  
pp. 64-68
Author(s):  
A.A. Erofeev ◽  
◽  
R.N. Nikitin ◽  
D.A. Mitrushkin ◽  
S.V. Golovin ◽  
...  

Author(s):  
E. D. Avedyan ◽  
I. V. Voronkov

Summary: the article proposes new software platform for automating the processes of preprocessing and marking up datasets with the aim of further solving analytical problems such as image classification and processing textual and parametric information using neural network technologies. The software platform uses modern technologies and combines a large number of methods in the form of a modular platform, which can be supplemented as the tasks of analytical data processing become more complicated. The need to develop such a software platform is dictated primarily by the fact that, given the current level of data volume growth, the actual transition to deep data analytics remains unattainable without such software platforms, since confidentiality, access to information and the use of external data processing resources are required.


Author(s):  
Jonathan Shapey ◽  
Thomas Dowrick ◽  
Rémi Delaunay ◽  
Eleanor C. Mackle ◽  
Stephen Thompson ◽  
...  

Abstract Purpose Image-guided surgery (IGS) is an integral part of modern neuro-oncology surgery. Navigated ultrasound provides the surgeon with reconstructed views of ultrasound data, but no commercial system presently permits its integration with other essential non-imaging-based intraoperative monitoring modalities such as intraoperative neuromonitoring. Such a system would be particularly useful in skull base neurosurgery. Methods We established functional and technical requirements of an integrated multi-modality IGS system tailored for skull base surgery with the ability to incorporate: (1) preoperative MRI data and associated 3D volume reconstructions, (2) real-time intraoperative neurophysiological data and (3) live reconstructed 3D ultrasound. We created an open-source software platform to integrate with readily available commercial hardware. We tested the accuracy of the system’s ultrasound navigation and reconstruction using a polyvinyl alcohol phantom model and simulated the use of the complete navigation system in a clinical operating room using a patient-specific phantom model. Results Experimental validation of the system’s navigated ultrasound component demonstrated accuracy of $$<4.5\,\hbox {mm}$$ < 4.5 mm and a frame rate of 25 frames per second. Clinical simulation confirmed that system assembly was straightforward, could be achieved in a clinically acceptable time of $$<15\,\hbox {min}$$ < 15 min and performed with a clinically acceptable level of accuracy. Conclusion We present an integrated open-source research platform for multi-modality IGS. The present prototype system was tailored for neurosurgery and met all minimum design requirements focused on skull base surgery. Future work aims to optimise the system further by addressing the remaining target requirements.


Author(s):  
Tianxing Wang ◽  
Junfeng Yang ◽  
Hongchao Wang ◽  
Hongwei Yu ◽  
Zhengyang Sun ◽  
...  

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