Molecular signatures of beef tenderness: Underlying mechanisms based on integromics of protein biomarkers from multi-platform proteomics studies

Meat Science ◽  
2021 ◽  
Vol 172 ◽  
pp. 108311 ◽  
Author(s):  
Mohammed Gagaoua ◽  
E.M. Claudia Terlouw ◽  
Anne Maria Mullen ◽  
Daniel Franco ◽  
Robyn D. Warner ◽  
...  
Foods ◽  
2021 ◽  
Vol 10 (5) ◽  
pp. 952
Author(s):  
Yao Zhu ◽  
Mohammed Gagaoua ◽  
Anne Maria Mullen ◽  
Alan L. Kelly ◽  
Torres Sweeney ◽  
...  

Beef tenderness is of central importance in determining consumers’ overall liking. To better understand the underlying mechanisms of tenderness and be able to predict it, this study aimed to apply a proteomics approach on the Longissimus thoracis (LT) muscle of young Limousin-sired bulls to identify candidate protein biomarkers. A total of 34 proteins showed differential abundance between the tender and tough groups. These proteins belong to biological pathways related to muscle structure, energy metabolism, heat shock proteins, response to oxidative stress, and apoptosis. Twenty-three putative protein biomarkers or their isoforms had previously been identified as beef tenderness biomarkers, while eleven were novel. Using regression analysis to predict shear force values, MYOZ3 (Myozenin 3), BIN1 (Bridging Integrator-1), and OGN (Mimecan) were the major proteins retained in the regression model, together explaining 79% of the variability. The results of this study confirmed the existing knowledge but also offered new insights enriching the previous biomarkers of tenderness proposed for Longissimus muscle.


2020 ◽  
Vol 46 (1) ◽  
pp. 98-115 ◽  
Author(s):  
Sruti Rayaprolu ◽  
Lenora Higginbotham ◽  
Pritha Bagchi ◽  
Caroline M. Watson ◽  
Tian Zhang ◽  
...  

AbstractThe repeated failures of amyloid-targeting therapies have challenged our narrow understanding of Alzheimer’s disease (AD) pathogenesis and inspired wide-ranging investigations into the underlying mechanisms of disease. Increasing evidence indicates that AD develops from an intricate web of biochemical and cellular processes that extend far beyond amyloid and tau accumulation. This growing recognition surrounding the diversity of AD pathophysiology underscores the need for holistic systems-based approaches to explore AD pathogenesis. Here we describe how network-based proteomics has emerged as a powerful tool and how its application to the AD brain has provided an informative framework for the complex protein pathophysiology underlying the disease. Furthermore, we outline how the AD brain network proteome can be leveraged to advance additional scientific and translational efforts, including the discovery of novel protein biomarkers of disease.


2021 ◽  
Vol 854 (1) ◽  
pp. 012029
Author(s):  
Mohammed Gagaoua

Abstract This study aimed to provide an overview of the strategy of meat quality biomarkers identification from protein profiling to the establishment of putative protein biomarkers with a focus on beef tenderness and colour traits. Further, the current knowledge gained by data-integration, also known as integromics, of published meat proteomics studies during the last decade is briefly discussed in terms of the current list of protein candidate biomarkers revealed using different proteomics platforms and evaluated by proteomics-based approaches. The main biochemical pathways underlying the determination of tenderness and colour traits as important beef eating qualities revealed by bioinformatics analyses such as Gene Ontology annotations, pathway and process enrichments are further considered. This paper also addresses the potential of integromics and data-mining, in the era of big data and data analytics, to broaden our knowledge on the biochemical mechanisms underlying the conversion of muscle into meat and the consequences on beef sensory quality traits (tenderness and colour). Finally, the emerging interest of using such gathered and shortlisted protein biomarkers for first validation and then early post-mortem prediction of the potential quality of beef carcasses is highlighted.


animal ◽  
2011 ◽  
Vol 5 (6) ◽  
pp. 885-894 ◽  
Author(s):  
N. Guillemin ◽  
C. Jurie ◽  
I. Cassar-Malek ◽  
J.-F. Hocquette ◽  
G. Renand ◽  
...  

2020 ◽  
Vol 217 ◽  
pp. 103685 ◽  
Author(s):  
Sabrina Boudon ◽  
Daoud Ounaissi ◽  
Didier Viala ◽  
Valérie Monteils ◽  
Brigitte Picard ◽  
...  

2015 ◽  
Vol 128 ◽  
pp. 365-374 ◽  
Author(s):  
Mohammed Gagaoua ◽  
E.M. Claudia Terlouw ◽  
Abdelghani Boudjellal ◽  
Brigitte Picard

2008 ◽  
Vol 44 ◽  
pp. 11-26 ◽  
Author(s):  
Ralph Beneke ◽  
Dieter Böning

Human performance, defined by mechanical resistance and distance per time, includes human, task and environmental factors, all interrelated. It requires metabolic energy provided by anaerobic and aerobic metabolic energy sources. These sources have specific limitations in the capacity and rate to provide re-phosphorylation energy, which determines individual ratios of aerobic and anaerobic metabolic power and their sustainability. In healthy athletes, limits to provide and utilize metabolic energy are multifactorial, carefully matched and include a safety margin imposed in order to protect the integrity of the human organism under maximal effort. Perception of afferent input associated with effort leads to conscious or unconscious decisions to modulate or terminate performance; however, the underlying mechanisms of cerebral control are not fully understood. The idea to move borders of performance with the help of biochemicals is two millennia old. Biochemical findings resulted in highly effective substances widely used to increase performance in daily life, during preparation for sport events and during competition, but many of them must be considered as doping and therefore illegal. Supplements and food have ergogenic potential; however, numerous concepts are controversially discussed with respect to legality and particularly evidence in terms of usefulness and risks. The effect of evidence-based nutritional strategies on adaptations in terms of gene and protein expression that occur in skeletal muscle during and after exercise training sessions is widely unknown. Biochemical research is essential for better understanding of the basic mechanisms causing fatigue and the regulation of the dynamic adaptation to physical and mental training.


2010 ◽  
Vol 24 (3) ◽  
pp. 198-209 ◽  
Author(s):  
Yan Wang ◽  
Jianhui Wu ◽  
Shimin Fu ◽  
Yuejia Luo

In the present study, we used event-related potentials (ERPs) and behavioral measurements in a peripherally cued line-orientation discrimination task to investigate the underlying mechanisms of orienting and focusing in voluntary and involuntary attention conditions. Informative peripheral cue (75% valid) with long stimulus onset asynchrony (SOA) was used in the voluntary attention condition; uninformative peripheral cue (50% valid) with short SOA was used in the involuntary attention condition. Both orienting and focusing were affected by attention type. Results for attention orienting in the voluntary attention condition confirmed the “sensory gain control theory,” as attention enhanced the amplitude of the early ERP components, P1 and N1, without latency changes. In the involuntary attention condition, compared with invalid trials, targets in the valid trials elicited larger and later contralateral P1 components, and smaller and later contralateral N1 components. Furthermore, but only in the voluntary attention condition, targets in the valid trials elicited larger N2 and P3 components than in the invalid trials. Attention focusing in the involuntary attention condition resulted in larger P1 components elicited by targets in small-cue trials compared to large-cue trials, whereas in the voluntary attention condition, larger P1 components were elicited by targets in large-cue trials than in small-cue trials. There was no interaction between orienting and focusing. These results suggest that orienting and focusing of visual-spatial attention are deployed independently regardless of attention type. In addition, the present results provide evidence of dissociation between voluntary and involuntary attention during the same task.


2008 ◽  
Vol 24 (4) ◽  
pp. 218-225 ◽  
Author(s):  
Bertram Gawronski ◽  
Roland Deutsch ◽  
Etienne P. LeBel ◽  
Kurt R. Peters

Over the last decade, implicit measures of mental associations (e.g., Implicit Association Test, sequential priming) have become increasingly popular in many areas of psychological research. Even though successful applications provide preliminary support for the validity of these measures, their underlying mechanisms are still controversial. The present article addresses the role of a particular mechanism that is hypothesized to mediate the influence of activated associations on task performance in many implicit measures: response interference (RI). Based on a review of relevant evidence, we argue that RI effects in implicit measures depend on participants’ attention to association-relevant stimulus features, which in turn can influence the reliability and the construct validity of these measures. Drawing on a moderated-mediation model (MMM) of task performance in RI paradigms, we provide several suggestions on how to address these problems in research using implicit measures.


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