Laminar peptide structure: energetic and structural evaluation using molecular dynamics

2021 ◽  
pp. 117261
Author(s):  
Douglas X. de Andrade ◽  
Eyber D. Alves ◽  
Agnaldo R. de Almeida ◽  
Guilherme Colherinhas
2015 ◽  
Vol 17 (39) ◽  
pp. 25822-25827 ◽  
Author(s):  
Nathan G. Hendricks ◽  
Ryan R. Julian

Distance-sensitive energy transfer and molecular dynamics are used to generate experimentally corroborated structures for peptides in the gas phase.


2020 ◽  
Vol 978 ◽  
pp. 436-445
Author(s):  
Mouparna Manna ◽  
Snehanshu Pal

In this present study, molecular dynamics (MD) simulation has been performed to investigate the influence of applied hydrostatic compressive and tensile pressure on glass forming process of Ni62Nb38 bimetallic glass using embedded atom method (EAM). During fast cooling (~10 K ps-1), tensile and compressive pressure has been applied having 0.001 GPa,0.01 GPa and 0.1 GPa magnitude. The glass transition temperature (Tg) for each pressurized (Tensile and Compressive nature) cooling case has been calculated and Tg is found to be dependent on both magnitude and nature of the pressure applied during cooling process.Voronoi cluster analysis has also been carried out to identify the structural evaluation during hydrostatically pressurised fast cooling process. In case of both hydrostatic tensile and compressive pressurised cooling processes, Tgincreases with the increase of pressure from 0.001 GPa to 0.1 GPa in magnitude.


PLoS ONE ◽  
2019 ◽  
Vol 14 (6) ◽  
pp. e0217992 ◽  
Author(s):  
Matthew Turner ◽  
Shaun T. Mutter ◽  
Oliver D. Kennedy-Britten ◽  
James A. Platts

Sign in / Sign up

Export Citation Format

Share Document