scholarly journals Mechanism of the glycine cleavage reaction. Steady state kinetic studies of the P-protein-catalyzed reaction.

1983 ◽  
Vol 258 (13) ◽  
pp. 8156-8162
Author(s):  
K Fujiwara ◽  
Y Motokawa
2001 ◽  
Vol 360 (3) ◽  
pp. 727-736 ◽  
Author(s):  
Bernd NIDETZKY ◽  
Christian EIS

Fungal trehalose phosphorylase is classified as a family 4 glucosyltransferase that catalyses the reversible phosphorolysis of α,α-trehalose with net retention of anomeric configuration. Glucosyl transfer to and from phosphate takes place by the partly rate-limiting interconversion of ternary enzyme–substrate complexes formed from binary enzyme–phosphate and enzyme–α-d-glucopyranosyl phosphate adducts respectively. To advance a model of the chemical mechanism of trehalose phosphorylase, we performed a steady-state kinetic study with the purified enzyme from the basidiomycete fungus Schizophyllum commune by using alternative substrates, inhibitors and combinations thereof in pairs as specific probes of substrate-binding recognition and transition-state structure. Orthovanadate is a competitive inhibitor against phosphate and α-d-glucopyranosyl phosphate, and binds 3×104-fold tighter (Ki≈ 1μM) than phosphate. Structural alterations of d-glucose at C-2 and O-5 are tolerated by the enzyme at subsite +1. They lead to parallel effects of approximately the same magnitude (slope = 1.14; r2 = 0.98) on the reciprocal catalytic efficiency for reverse glucosyl transfer [log (Km/kcat)] and the apparent affinity of orthovanadate determined in the presence of the respective glucosyl acceptor (log Ki). An adduct of orthovanadate and the nucleophile/leaving group bound at subsite +1 is therefore the true inhibitor and displays partial transition state analogy. Isofagomine binds to subsite −1 in the enzyme–phosphate complex with a dissociation constant of 56μM and inhibits trehalose phosphorylase at least 20-fold better than 1-deoxynojirimycin. The specificity of the reversible azasugars inhibitors would be explained if a positive charge developed on C-1 rather than O-5 in the proposed glucosyl cation-like transition state of the reaction. The results are discussed in the context of α-retaining glucosyltransferase mechanisms that occur with and without a β-glucosyl enzyme intermediate.


2005 ◽  
Vol 114 (1) ◽  
pp. 133-138 ◽  
Author(s):  
Iain D. KELLY ◽  
Peter F. KNOWLES ◽  
Kapil D. S. YADAV ◽  
William G. BARDSLEY ◽  
Paul LEFF ◽  
...  

Biochemistry ◽  
2004 ◽  
Vol 43 (43) ◽  
pp. 13827-13838 ◽  
Author(s):  
Michelle P. Roettger ◽  
Kevin A. Fiala ◽  
Susmitha Sompalli ◽  
Yuxia Dong ◽  
Zucai Suo

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