Characterisation, Recovery and Activity of Hydrophobic Compounds in Norway Spruce Log Soaking Pit Water: Could they be Used in Wood Preservative Formulations?

Purpose Norway spruce log soaking water (SLSW) is considered a waste in the plywood and veneer industry but has not been characterised, and its possible uses remain unexplored. The purpose of this study is to characterise and test the possibility of using SLSW in wood preservative formulations. Methods First, the SLSW was characterised, and the presence of carbohydrates in the log soaking water was reduced with a hydrophobic adsorbent to reduce the nutrient availability for fungi in the liquids. Then, the feasibility of using SLSW and the sugar free SLSW (denoted later as EHC solution) as wood preservatives was studied by testing their antifungal and antioxidant activities and performing a mini-block test against Schizophyllum commune, Trametes versicolor, Fibroporia vaillantii and Gloeophyllum trabeum. Results Several phenolic compounds were found in the SLSW. This water also had high antioxidant activity at 1000 mg/L before and after carbohydrate removal but no antifungal activity. Its impregnation in wood caused a slight reduction in mass loss of the Pinus sylvestris specimens but had no effect on the Fagus sylvatica specimens when exposed against Schizophyllum commune, Trametes versicolor, Fibroporia vaillantii and Gloeophyllum trabeum. Conclusion The SLSW as a wood preservative is invalid, even after partial carbohydrate removal. However, due to the presence of wood constituents, SLSW could be a resource for other uses requiring high antioxidant activity but specific applications need further investigation. Graphical Abstract

KEANEKARAGAMAN JAMUR MAKROSKOPIS DI KAWASAN AIR TERJUN CURUG EMBUN KOTA LUBUKLINGGAU

This study aims to determine the types, diversity index, species evenness index, dominance index, and relative density of macroscopic fungi in the Waterfall area of ​​Curug Embun, Marga Bakti Village, North Lubuklinggau District I. This research is quantitative descriptive. Data collection techniques in this study using the roaming method with sampling using purposive sampling technique. The results of the analysis of the macroscopic fungal diversity index in the Curug Embun Waterfall area were 1.3530, the species evenness index was 0.4516, the dominance index was 0.4776 and the highest relative density was 68.027%. There are 3 edible species and 17 non-edible mushrooms. 17 species of macroscopic mushrooms in the Waterfall area of ​​Curug Embun were found. The diversity index, dominance, and Simpson index are in the medium category. Schizophyllum commune is the most commonly found species.

Lessons on fruiting body morphogenesis from genomes and transcriptomes of Agaricomycetes

Fruiting bodies of mushroom-forming fungi (Agaricomycetes) are among the most complex structures produced by fungi. Unlike vegetative hyphae, fruiting bodies grow determinately and follow a genetically encoded developmental program that orchestrates tissue differentiation, growth and sexual sporulation. In spite of more than a century of research, our understanding of the molecular details of fruiting body morphogenesis is limited and a general synthesis on the genetics of this complex process is lacking. In this paper, we aim to comprehensively identify conserved genes related to fruiting body morphogenesis and distill novel functional hypotheses for functionally poorly characterized genes. As a result of this analysis, we report 921 conserved developmentally expressed gene families, only a few dozens of which have previously been reported in fruiting body development. Based on literature data, conserved expression patterns and functional annotations, we provide informed hypotheses on the potential role of these gene families in fruiting body development, yielding the most complete description of molecular processes in fruiting body morphogenesis to date. We discuss genes related to the initiation of fruiting, differentiation, growth, cell surface and cell wall, defense, transcriptional regulation as well as signal transduction. Based on these data we derive a general model of fruiting body development, which includes an early, proliferative phase that is mostly concerned with laying out the mushroom body plan (via cell division and differentiation), and a second phase of growth via cell expansion as well as meiotic events and sporulation. Altogether, our discussions cover 1480 genes of Coprinopsis cinerea, and their orthologs in Agaricus bisporus, Cyclocybe aegerita, Armillaria ostoyae, Auriculariopsis ampla, Laccaria bicolor, Lentinula edodes, Lentinus tigrinus, Mycena kentingensis, Phanerochaete chrysosporium, Pleurotus ostreatus, and Schizophyllum commune, providing functional hypotheses for ~10% of genes in the genomes of these species. Although experimental evidence for the role of these genes will need to be established in the future, our data provide a roadmap for guiding functional analyses of fruiting related genes in the Agaricomycetes. We anticipate that the gene compendium presented here, combined with developments in functional genomics approaches will contribute to uncovering the genetic bases of one of the most spectacular multicellular developmental processes in fungi. Key words: functional annotation; comparative genomics; cell wall remodeling; development; fruiting body morphogenesis; mushroom; transcriptome

Genetic structure and evolutionary diversity of mating-type (MAT) loci in Hypsizygus marmoreus

The mating compatibility in fungi is generally governed by genes located within a single or two unlinked mating type (MAT) loci. Hypsizygus marmoreus is an edible mushroom in the order Agaricales with a tetrapolar system, which contains two unlinked MAT loci-homeodomain (HD) transcription factor genes and pheromone/pheromone receptor genes (P/R). In this study, we analyzed the genetic structure and diversity of MAT loci in tetrapolar system of H. marmoreus through sequencing of 54 heterokaryon and 8 homokaryon strains. Although within the HD loci, the gene order was conserved, the gene contents were variable, and the HD loci haplotypes were further classified into four types. By analyzing the structure, phylogeny, and the HD transmissibility based on the progeny of these four HD mating-type loci types, we found that they were heritable and tightly linked at the HD loci. The P/R loci genes were found to comprise three pheromone receptors, three pheromones, and two pheromone receptor-like genes. Intra- and inter-specific phylogenetic analyses of pheromone receptors revealed that the STE3 genes were divided into three groups, and we thus theorize that they diverged before speciation. Comparative analysis of the MAT regions among 73 Basidiomycete species indicated that the diversity of HD and P/R loci in Agaricales and Boletales may contribute to mating compatibility. The number of HD genes were not correlated with the tetrapolar or bipolar systems. In H. marmoreus, the expression levels of these genes at HD and P/R loci of compatible strains were found higher than in those of homonuclear/homokaryotic strains, indicating that these mating genes acted as switches for mating processes. Further collinear analysis of HD loci in interspecific species found that HD loci contains conserved recombination hotspots showing major rearrangements in Coprinopsis cinerea and Schizophyllum commune, suggesting different mechanisms for evolution of physically linked MAT loci in these groups. It seems likely that gene rearrangements are common in Agaricales fungi around HD loci. Together, our study provides insights into the genomic basis of mating compatibility in H. marmoreus.

The local populations of the fungus Schizophyllum commune Fr. as drivers of its biodiversity

Changes that occur on the local level can explain the processes on the population level and, at the same time, are the driving force of species adaptation. This manuscript reports data about genetic diversities of the fungus Schizophyllum commune on the level of a local population. Objects of the study were dicarious cultures of S. commune collected from 38 basidiocarps grown on the territory of Holosiivskyi National Nature Park, Lysa Hora Regional Landscape Park and Feofaniya forest parcel (Ukraine). Results showed similarity of genetic variability of S. commune in different local populations. The heterozygote deficiency of some loci that was discovered might have resulted from new forms of allozymes that have not become widespread or due to small population sizes. The degree of differentiation of genes between local studied populations was moderate due to the high flow of genes. The absence of spatial structuration of genotypes is established, and the Mantel test showed a lack of interconnection between the genetic component and the geographical coordinates of the samples. It has been suggested that wind direction and terrain are the factors that influence the genetic structure of local populations.