ABSTRACT
CTXφ is a lysogenic, filamentous bacteriophage. Its genome includes the genes encoding cholera toxin (ctxAB), one of the principal virulence factors of Vibrio cholerae; consequently, nonpathogenic strains of V. cholerae can be converted into toxigenic strains by CTXφ infection. O139 Calcutta strains of V. cholerae, which were linked to cholera outbreaks in Calcutta, India, in 1996, are novel pathogenic strains that carry two distinct CTX prophages integrated in tandem: CTXET, the prophage previously characterized within El Tor strains, and a new CTX Calcutta prophage (CTXcalc). We found that the CTXcalc prophage gives rise to infectious virions; thus, CTXETφ is no longer the only known vector for transmission of ctxAB. The most functionally significant differences between the nucleotide sequences of CTXcalcφ and CTXETφ are located within the phages’ repressor genes (rstR
calc andrstR
ET, respectively) and their RstR operators. RstRcalc is a novel, allele-specific repressor that regulates replication of CTXcalcφ by inhibiting the activity of the rstA
calc promoter. RstRcalc has no inhibitory effect upon the classical and El Tor rstA promoters, which are instead regulated by their cognate RstRs. Consequently, production of RstRcalc renders a CTXcalc lysogen immune to superinfection by CTXcalcφ but susceptible (heteroimmune) to infection by CTXETφ. Analysis of the prophage arrays generated by sequentially integrated CTX phages revealed that pathogenic V. cholerae O139 Calcutta probably arose via infection of an O139 CTXETφ lysogen by CTXcalcφ.