Analysis of Genetic Diversity in Natural Populations of Psathyrostachys huashanica Keng Using Microsatellite (SSR) Markers

2010 ◽  
Vol 9 (4) ◽  
pp. 463-471 ◽  
Author(s):  
Wen-xian LIU ◽  
Wei-hua LIU ◽  
Jun WU ◽  
Ai-nong GAO ◽  
Li-hui LI
Forests ◽  
2021 ◽  
Vol 12 (10) ◽  
pp. 1365
Author(s):  
Lin Chen ◽  
Tingting Pan ◽  
Huirong Qian ◽  
Min Zhang ◽  
Guodong Yang ◽  
...  

Osmanthus serrulatus Rehder (Oleaceae) is an endemic spring-flowering species in China. It is narrowly distributed in the southwestern Sichuan Basin, and is facing the unprecedented threat of extinction due to problems associated with natural regeneration, habitat fragmentation and persistent and serious human interference. Here, the genetic diversity and population structure of 262 individuals from ten natural populations were analyzed using 18 microsatellites (SSR) markers. In total, 465 alleles were detected across 262 individuals, with a high polymorphic information content (PIC = 0.893). A high level of genetic diversity was inferred from the genetic diversity parameters (He = 0.694, I = 1.492 and PPL = 98.33%). AMOVA showed that a 21.55% genetic variation existed among populations and the mean pairwise Fst (0.215) indicated moderate genetic population differentiation. The ten populations were basically divided into three groups, including two obviously independent groups. Our results indicate that multiple factors were responsible for the complicated genetic relationship and endangered status of O. serrulatus. The concentrated distribution seems to be the key factor causing endangerment, and poor regeneration, human-induced habitat loss and fragmentation seem to be the primary factors in the population decline and further genetic diversity loss. These findings will assist in future conservation management and the scientific breeding of O. serrulatus.


Trees ◽  
2021 ◽  
Author(s):  
Yuhan Wu ◽  
Yanpeng Gu ◽  
Yizeng Lu ◽  
Ze Zhang ◽  
Ruili Zhang ◽  
...  

2015 ◽  
Vol 63 ◽  
pp. 183-189 ◽  
Author(s):  
Yajun Ding ◽  
Junhong Zhang ◽  
Yunfeng Lu ◽  
Er'pei Lin ◽  
Luhuan Lou ◽  
...  

2016 ◽  
Vol 14 (2) ◽  
pp. 245-252
Author(s):  
Đinh Thị Phòng ◽  
Trần Thị Liễu ◽  
Vũ Thị Thu Hiền

Cephalotaxus mannii Hook.f. is one of 15 species of conifer in the Central Highlands. Cephalotaxus mannii is a scarce medicinal conifer endemic to the south central region of China and Vietnam. In Vietnam, although widely distributed species (Lao Cai, Ha Giang, Thanh Hoa, Nghe An, Thua Thien Hue, Kon Tum, Gia Lai, Lam Dong...) but is considered rare and vulnerable by the indiscriminately exploitation of people. In this study, 18 SSR markers were used to analyze the genetic diversity of 34 individuals C. mannii collected in Ta Nung and Hiep An of Lam Dong province. The results showed 12/18 polymorphic markers. Among 36 DNA amplified fragments, 24 were polymorphic (66.66%). Genetic diversity in Hiep An population (h = 0.269; I = 0.449 and PPB = 72.22%) was higher than that of Ta Nung (h = 0.433; I = 0.264 and PPB = 66.67%). The total level of molecular variance (AMOVA) among populations was 27.74% and among individuals within the populations was 72.26%. The average of gene flow value (Nm) of the species C. mannii populations was 3,310. Both Ta Nung and Hiep An populations had Wright’s inbreeding coefficient Fis <0 (- 0.244, - 0.052, respectively) and the private allele (Ap) (0.222, 0.333, respectively). A dendrogram constructed based on similarity matrix of 34 C. mannii samples divided into two main groups with their genetic similarity coefficient ranged from 65% (Cpm31 and Cpm32) to 100% (Cpm16 and Cpm17, Cpm21 and Cpm22). Molecular analysis results showed that C. mannii species should be protected at the population level.


Genetika ◽  
2017 ◽  
Vol 49 (3) ◽  
pp. 979-988 ◽  
Author(s):  
Vladan Popovic ◽  
Aleksandar Lucic ◽  
Ljubinko Rakonjac ◽  
Branislav Cvjetkovic ◽  
Snezana Mladenovic-Drinic ◽  
...  

The paper presents the results of the analysis of genetic variability of eight populations of silver fir (Abies alba Mill.) in Serbia obtained using SSR markers. The genomic DNA was isolated from tissue of needles of all eight populations. Due to the costly and lengthy process a small number of the SSR markers for Abies alba have been developed, so in this study were used the microsatellite markers of related species. The obtained results indicate a low level of the genetic variability between natural populations of silver fir. The total number of alleles detected with nine SSR markers in eight studied populations of silver fir is 28. The range of alleles varies from two for NFF15 to six for SF78 with an average of 3.1 alleles per locus. The mean value of genetic similarity between populations is 0.92. The smallest genetic similarity between pairs of populations is 0.82 (Dubocica Bare and Stara Planina; Dubocica Bare and Tara) and the greatest genetic similarity is 1 (Zlatar and Stara Planina, Zlatar and Tara, Stara Planina and Tara). A basic insight into the level of genetic diversity of natural populations of silver fir in Serbia, which are located in a relatively small area, has been given using a set of SSR markers. The obtained results can be used in the future strategy for the management and regeneration of silver fir forests.


2009 ◽  
Vol 17 (3) ◽  
pp. 296 ◽  
Author(s):  
Tian Hua ◽  
Kang Ming ◽  
Li Li ◽  
Yao Xiaohong ◽  
Huang Hongwen

2020 ◽  
Vol 3 ◽  
pp. 91-95
Author(s):  
A. Mammadov ◽  
◽  
A. Ipek ◽  
S. H. Teoman-Duran ◽  
S. A. Aghayeva ◽  
...  

In the article, genetic diversity of olive samples from Azerbaijan and Turkey, genotyping of natural populations and gene pools with molecular markers, associative mapping, genome analysis, carried out jointly genetic relationships between genotypes of olives and genetics originating from Azerbaijan and Turkey are studied by molecular analysis through their SSR markers. When the research work is successful, the results of this study will be demonstrated the presence of SSR markers to distinguish olive genotypes and further studies on olive production in both countries will be undertaken.


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