Genetic characterization of members of the genus Contracaecum (Nematoda: Anisakidae) from fish-eating birds from west-central Florida, USA, with evidence of new species

SUMMARYSpecimens of Contracaecum spp. from Phalacrocorax auritus and Pelecanus occidentalis from Florida were characterized by sequencing of the small subunit of the mitochondrial ribosomal RNA gene (rrnS) and by PCR-based RFLP analysis of the same gene and of the internal transcribed spacers (ITS) of nuclear ribosomal DNA. Analyses of the rrnS sequence data using the MP and UPGMA approaches yielded trees with similar topologies, delineating 3 main clusters. Specimens from Ph. auritus, morphologically assigned to C. rudolphii (s.l.), were part of the cluster comprising also the other 2 species of the C. rudolphii complex (A and B), but representing a genetically distinct group, potentially corresponding to a distinct lineage within the complex, provisionally named as C. rudolphii C. The second cluster comprised 5 individuals from P. occidentalis, which formed a genetically relatively homogeneous group. The rrnS data indicate that these specimens (indicated as Contracaecum sp. 1) are clearly genetically different from the morphologically most closely related species, i.e. C. rudolphii (s.l.) and C. microcephalum, and could represent a new species. The third cluster comprised 7 specimens from P. occidentalis morphologically assigned to C. multipapillatum (s.l.). These were shown to be genetically homogeneous and related to but quite distinct from C. multipapillatum from Greece, although additional studies are needed to assess their status. PCR-RFLP based markers for the quick identification of these taxa are provided.

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The Evolution of Life Modes in Stictidaceae, with Three Novel Taxa

Journal of Fungi ◽

10.3390/jof7020105 ◽

2021 ◽

Vol 7 (2) ◽

pp. 105

Author(s):

Vinodhini Thiyagaraja ◽

Robert Lücking ◽

Damien Ertz ◽

Samantha C. Karunarathna ◽

Dhanushka N. Wanasinghe ◽

...

Keyword(s):

New Species ◽

Large Scale ◽

Sequence Data ◽

Large Subunit ◽

Monte Carlo Sampling ◽

Small Subunit ◽

Sensu Stricto ◽

Internal Transcribed Spacers ◽

Character State ◽

Phenotypic Data

Ostropales sensu lato is a large group comprising both lichenized and non-lichenized fungi, with several lineages expressing optional lichenization where individuals of the same fungal species exhibit either saprotrophic or lichenized lifestyles depending on the substrate (bark or wood). Greatly variable phenotypic characteristics and large-scale phylogenies have led to frequent changes in the taxonomic circumscription of this order. Ostropales sensu lato is currently split into Graphidales, Gyalectales, Odontotrematales, Ostropales sensu stricto, and Thelenellales. Ostropales sensu stricto is now confined to the family Stictidaceae, which includes a large number of species that are poorly known, since they usually have small fruiting bodies that are rarely collected, and thus, their taxonomy remains partly unresolved. Here, we introduce a new genus Ostropomyces to accommodate a novel lineage related to Ostropa, which is composed of two new species, as well as a new species of Sphaeropezia, S. shangrilaensis. Maximum likelihood and Bayesian inference analyses of mitochondrial small subunit spacers (mtSSU), large subunit nuclear rDNA (LSU), and internal transcribed spacers (ITS) sequence data, together with phenotypic data documented by detailed morphological and anatomical analyses, support the taxonomic affinity of the new taxa in Stictidaceae. Ancestral character state analysis did not resolve the ancestral nutritional status of Stictidaceae with confidence using Bayes traits, but a saprotrophic ancestor was indicated as most likely in a Bayesian binary Markov Chain Monte Carlo sampling (MCMC) approach. Frequent switching in nutritional modes between lineages suggests that lifestyle transition played an important role in the evolution of this family.

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Eight new species of Siphoderina Manter, 1934 (Digenea, Cryptogonimidae) infecting Lutjanidae and Haemulidae (Perciformes) off Australia

Acta Parasitologica ◽

10.2478/s11686-008-0053-4 ◽

2008 ◽

Vol 53 (4) ◽

Cited By ~ 28

Author(s):

Terrence Miller ◽

Thomas Cribb

Keyword(s):

New Species ◽

Sequence Data ◽

Large Subunit ◽

Strong Support ◽

Internal Transcribed Spacers ◽

Nuclear Ribosomal Dna ◽

Evolutionary Divergence ◽

New Combinations ◽

Closely Related Species ◽

History Of

AbstractWe report nine species, eight of which are new, of cryptogonimids belonging to Siphoderina Manter, 1934 from the intestine and pyloric caeca of five species of Lutjanidae (Lutjanus adetii, L. argentimaculatus, L. carponotatus, L. fulviflamma and L. russelli) and one species of Haemulidae (Plectorhinchus gibbosus) recovered from Heron and Lizard Islands off the Great Barrier Reef, Moreton Bay and Ningaloo Reef in Western Australia. We also report the metacercariae of two species from an atherinid fish, Atherinomorus capricornensis, from near Heron Island. Morphological analysis of the species reported here was augmented by DNA sequence analyses utilizing data from the internal transcribed spacers (ITS) 1 and 2, large subunit (LSU) and 5.8S nuclear ribosomal DNA to explore the integrity of the species and their biogeographic distributions. The analysis found strong support for the integrity of Siphoderina and found that it is the sister-taxon to Beluesca Miller et Cribb, 2007. Sequencing included multiple replicates and no intraspecific variation was observed between any of the taxa over the rDNA regions examined. Sequence data from the ITS and LSU regions were analysed with that of species of Beluesca, Caulanus Miller et Cribb, 2007, Chelediadema Miller et Cribb, 2007, Latuterus Miller et Cribb, 2007, Neometadena Hafeezullah et Siddiqi, 1970 and Retrovarium Miller et Cribb, 2007 which all also infect lutjanids or haemulids. Some closely related species of Siphoderina infect only distantly related fishes among the haemulids and lutjanids whereas others form clusters in association with clusters of closely related lutjanids. This pattern suggests a history of some co-evolutionary divergence together with significant host switching. Pseudallacanthochasmus Velasquez, 1961 is considered a synonym of Siphoderina and the new combinations S. grandispinus (Velasquez, 1961) n. comb. and S. magnivesiculum (Gaevskaya et Aljoshkina, 1985) n. comb. are proposed. As a result of the new species described here and these new combinations, Siphoderina now contains 43 species, making it by far the largest genus of the Cryptogonimidae.

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Phylogenetic Relationships of Local Durian Species based on Morphological Characteristics and PCR-RFLP Analysis of the Ribosomal Internal Transcribed Spacer (ITS) DNA

Biosaintifika Journal of Biology & Biology Education ◽

10.15294/biosaintifika.v8i3.6748 ◽

2016 ◽

Vol 8 (3) ◽

pp. 362

Author(s):

Fidia Fibriana ◽

Lutfia Nur Hadiyanti

Keyword(s):

Phylogenetic Relationships ◽

Internal Transcribed Spacer ◽

Morphological Characteristics ◽

Biology Education ◽

Rflp Analysis ◽

Restriction Pattern ◽

Internal Transcribed Spacers ◽

Central Java ◽

Pcr Rflp ◽

Pcr Products

In this study, twenty local durian accessions obtained from Central Java in situ collection were characterized using the morphological characteristics and the restriction patterns which generated from the region spanning the internal transcribed spacers ITS LEU and ITS 4. Morphological characteristics of durian leaf, stem, tree, and fruit showed variations for the different accessions, whereas polymerase chain reaction (PCR) products of ribosomal DNA region showed a low length of variation. The size of the PCR products and the restriction analyses with the restriction endonucleases Bsp1431yielded a restriction pattern for each accessions. The results of this study can be utilized by local durian farmers as a preliminary reference for durian propagation. The data obtained need to be supported by further research using the other molecular markers to obtain more accurate data. The clear identity of durian species can help the management of propagation systems by farmers to get superior local durian.How to CiteFibriana, F., & Hadiyanti, L. N. (2016). Phylogenetic Relationships of Local Durian Species based on Morphological Characteristics and PCR-RFLP Analysis of the Ribosomal Internal Transcribed Spacer (ITS) DNA. Biosaintifika: Journal of Biology & Biology Education, 8(3), 362-370.

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Conlarium sichuanense sp. nov., on Ficus virens from Sichuan Province, China

Phytotaxa ◽

10.11646/phytotaxa.528.1.1 ◽

2021 ◽

Vol 528 (1) ◽

pp. 1-9

Author(s):

TIAN ZHANG ◽

NING-GUO LIU ◽

WEN-LI LI ◽

JIAN-KUI LIU

Keyword(s):

Phylogenetic Analysis ◽

New Species ◽

Sequence Data ◽

Sichuan Province ◽

Terrestrial Habitat ◽

Ficus Virens ◽

Distinct Lineage

A new hyphomycetous species, Conlarium sichuanense was found on dead branches of Ficus virens (Moraceae) from a terrestrial habitat in Sichuan Province, China. The new species has sporodochial colonies on natural substate, with micronematous conidiophores and muriform, brown and subglobose to irregular-shaped conidia. The phylogenetic analysis based on combined LSU, ITS and SSU sequence data showed that Conlarium sichuanense clustered together with C. aquaticum and C. thailandense and presented as a distinct lineage. A detailed, illustrated description and comparison with related Conlarium species are provided.

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Spegazzinia camelliae sp. nov. (Didymosphaeriaceae, Pleosprales), a new endophytic fungus from northern Thailand

Phytotaxa ◽

10.11646/phytotaxa.483.2.4 ◽

2021 ◽

Vol 483 (2) ◽

pp. 117-128

Author(s):

NAKARIN SUWANNARACH ◽

JATURONG KUMLA ◽

SAISAMORN LUMYONG

Keyword(s):

Phylogenetic Analyses ◽

Large Subunit ◽

Elongation Factor ◽

Small Subunit ◽

Internal Transcribed Spacers ◽

Nuclear Ribosomal Dna ◽

Full Description ◽

Translation Elongation ◽

Spine Length ◽

Elongation Factor 1 Alpha

A new endophytic ascomycete, described herein as Spegazzinia camelliae, was isolated from leaves of Camellia sinensis var. assamica collected from Nan Province, Thailand. This species is characterized by basauxic conidiophores and dark brown to blackish brown α and β conidia. It can be distinguished from previously described Spegazzinia species by the spine length of the α conidia and the size of the β conidia. Multi-gene phylogenetic analyses of the small subunit (SSU), large subunit (LSU) and internal transcribed spacers (ITS) of the nuclear ribosomal DNA (rDNA) and the translation elongation factor 1-alpha (tef1) genes also support S. camelliae is a distinct new species within Spegazzinia. A full description, color photographs, illustrations and a phylogenetic tree showing the position of S. camelliae are provided.

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Tremateia murispora sp. nov. (Didymosphaeriaceae, Pleosporales) from Guizhou, China

Phytotaxa ◽

10.11646/phytotaxa.416.1.10 ◽

2019 ◽

Vol 416 (1) ◽

pp. 79-87 ◽

Cited By ~ 2

Author(s):

YAO FENG ◽

SHENG-NAN ZHANG ◽

ZUO-YI LIU

Keyword(s):

New Species ◽

Sequence Data ◽

Phylogenetic Analyses ◽

Monophyletic Clade ◽

Distinct Lineage ◽

A New Species

An Ascomycetous species was found from decaying woody stems in Guizhou, China. Morphologically, the fungus can be assigned well in Tremateia in having immersed ascomata, cellular pseudoparaphyses and muriform ascospores, but it differs from other species in having the 3–7 transverse septa ascospores surrounded by a gelatinous sheath. Phylogenetic analyses based on a concatenated dataset of ITS, LSU, SSUand TEF1-α sequence data indicated that the fungus belongs to the genus Tremateia, Didymosphaeriaceae, four taxa formed a monophyletic clade and represent the genus Tremateia with well supported. The new collection formed a distinct lineage and can be recognized as a new species. Therefore, a new species Tremateia murispora is introduced with detailed description and illustration, the notes on its morphologically and phylogenetically related taxa is provided.

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Morphology, genetic characterization and molecular phylogeny of pinworm Skrjabinema longicaudatum n. sp. (Oxyurida: Oxyuridae) from the endangered Tibetan antelope Pantholops hodgsonii (Abel) (Artiodactyla: Bovidae)

Parasites & Vectors ◽

10.1186/s13071-020-04430-6 ◽

2020 ◽

Vol 13 (1) ◽

Author(s):

Yi-Fan Cao ◽

Hui-Xia Chen ◽

Yang Li ◽

Dang-Wei Zhou ◽

Shi-Long Chen ◽

...

Keyword(s):

New Species ◽

Ribosomal Dna ◽

Dna Sequences ◽

Sequence Data ◽

Phylogenetic Analyses ◽

Large Subunit ◽

Small Subunit ◽

Sister Relationship ◽

Tibetan Antelope ◽

A New Species

Abstract Background The Tibetan antelope Pantholops hodgsonii (Abel) (Artiodactyla: Bovidae) is an endangered species of mammal endemic to the Qinghai-Tibetan Plateau. Parasites and parasitic diseases are considered to be important threats in the conservation of the Tibetan antelope. However, our present knowledge of the composition of the parasites of the Tibetan antelope remains limited. Methods Large numbers of nematode parasites were collected from a dead Tibetan antelope. The morphology of these nematode specimens was observed using light and scanning electron microscopy. The nuclear and mitochondrial DNA sequences, i.e. small subunit ribosomal DNA (18S), large subunit ribosomal DNA (28S), internal transcribed spacer (ITS) and cytochrome c oxidase subunit 1 (cox1), were amplified and sequenced for molecular identification. Moreover, phylogenetic analyses were performed using maximum likelihood (ML) inference based on 28S and 18S + 28S + cox1 sequence data, respectively, in order to clarify the systematic status of these nematodes. Results Integrated morphological and genetic evidence reveals these nematode specimens to be a new species of pinworm Skrjabinema longicaudatum (Oxyurida: Oxyuridae). There was no intraspecific nucleotide variation between different individuals of S. longicaudatum n. sp. in the partial 18S, 28S, ITS and cox1 sequences. However, a high level of nucleotide divergence was revealed between the new species and its congeners in 28S (8.36%) and ITS (20.3–23.7%) regions, respectively. Molecular phylogenetic results suggest that the genus Skrjabinema should belong to the subfamily Oxyurinae (Oxyuroidea: Oxyuridae), instead of the subfamily Syphaciidae or Skrjabinemiinae in the traditional classification, as it formed a sister relationship to the genus Oxyuris. Conclusions A new species of pinworm Skrjabinema longicaudatum n. sp. (Oxyurida: Oxyuridae) is described. Skrjabinema longicaudatum n. sp. represents the first species of Oxyurida (pinworm) and the fourth nematode species reported from the Tibetan antelope. Our results contribute to the knowledge of the species diversity of parasites from the Tibetan antelope, and clarify the systematic position of the genus Skrjabinema.

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Morphological and molecular characterization of Cucullanus hainanensis sp. nov. (Ascaridida: Cucullanidae) from Muraenichthys gymnopterus (Bleeker) (Anguilliformes: Ophichthidae) in the South China Sea

Acta Parasitologica ◽

10.2478/s11686-014-0303-6 ◽

2014 ◽

Vol 59 (4) ◽

Cited By ~ 2

Author(s):

Zhen Xu ◽

Lu-Ping Zhang ◽

Liang Li

Keyword(s):

New Species ◽

South China Sea ◽

South China ◽

Small Subunit ◽

The South China Sea ◽

Nuclear Ribosomal Dna ◽

The South ◽

China Sea ◽

Second Internal Transcribed Spacer

AbstractCucullanus hainanensis sp. nov., collected from Muraenichthys gymnopterus (Bleeker) (Anguilliformes: Ophichthidae) in the South China Sea, was described using both light and scanning electron microscopy. The new species can be readily distinguished from its congeners by the large pseudobuccal capsule, the position of excretory pore and deirids, the length of spicules (0.64–0.76 mm, 5.84–6.67% of body length) and gubernaculum (0.21–0.24 mm), the number and arrangement of caudal papillae and the particular morphology of cloacal region in male. The new species was also characterized using molecular methods by sequencing and analysing the small subunit (18S) and the second internal transcribed spacer (ITS-2) of nuclear ribosomal DNA (rDNA). In addition, Cucullanus muraenesocis (Yin et Zhang, 1983) was regarded a homonym of C. muraenesocis Yamaguti, 1961, and a new name, Cucullanus wangi nom. nov. was given to it.

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Two new entomopathogenic species of Ophiocordyceps in Thailand

MycoKeys ◽

10.3897/mycokeys.47.29898 ◽

2019 ◽

Vol 47 ◽

pp. 53-74 ◽

Cited By ~ 1

Author(s):

Yuan-Pin Xiao ◽

Sinang Hongsanan ◽

Kevin D. Hyde ◽

Siraprapa Brooks ◽

Ning Xie ◽

...

Keyword(s):

New Species ◽

Sequence Data ◽

Phylogenetic Analyses ◽

Similar Species ◽

Closely Related Species ◽

The Family ◽

Distinct Lineage ◽

Morphological Differences ◽

A New Species ◽

Rpb1 Sequence

Ophiocordyceps is entomopathogenic and the largest studied genus in the family Ophiocordycipitaceae. Many species in this genus have been reported from Thailand. The first new species introduced in this paper, Ophiocordycepsglobiceps, differs from other species based on its smaller perithecia, shorter asci and secondary ascospores and additionally, in parasitising fly species. Phylogenetic analyses of combined LSU, SSU, ITS, TEF1α and RPB1 sequence data indicate that O.globiceps forms a distinct lineage within the genus Ophiocordyceps as a new species. The second new species, Ophiocordycepssporangifera, is distinguished from closely related species by infecting larvae of insects (Coleoptera, Elateridae) and by producing white to brown sporangia, longer secondary synnemata and shorter primary and secondary phialides. We introduce O.sporangifera based on its significant morphological differences from other similar species, even though phylogenetic distinction is not well-supported.

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