Ultrasensitive Colorimetric Detection of 17β-Estradiol: The Effect of Shortening DNA Aptamer Sequences

2015 ◽  
Vol 87 (8) ◽  
pp. 4201-4209 ◽  
Author(s):  
Omar A. Alsager ◽  
Shalen Kumar ◽  
Bicheng Zhu ◽  
Jadranka Travas-Sejdic ◽  
Kenneth P. McNatty ◽  
...  
2014 ◽  
Vol 4 (1) ◽  
Author(s):  
Jinchuan Liu ◽  
Wenhui Bai ◽  
Shucao Niu ◽  
Chao Zhu ◽  
Shuming Yang ◽  
...  

The Analyst ◽  
2014 ◽  
Vol 139 (6) ◽  
pp. 1550-1561 ◽  
Author(s):  
Yuangen Wu ◽  
Shenshan Zhan ◽  
Lumei Wang ◽  
Pei Zhou

The DNA aptamer toward cadmium was selected by a novel SELEX strategy and further considered as a recognition element for the colorimetric detection of Cd(ii).


2011 ◽  
Vol 415 (2) ◽  
pp. 175-181 ◽  
Author(s):  
Kyung-Mi Song ◽  
Minseon Cho ◽  
Hunho Jo ◽  
Kyoungin Min ◽  
Sung Ho Jeon ◽  
...  

2019 ◽  
Vol 47 (12) ◽  
pp. e71-e71 ◽  
Author(s):  
Weijuan Yang ◽  
Haixiang Yu ◽  
Obtin Alkhamis ◽  
Yingzhu Liu ◽  
Juan Canoura ◽  
...  

Abstract Class-specific bioreceptors are highly desirable for recognizing structurally similar small molecules, but the generation of such affinity elements has proven challenging. We here develop a novel ‘parallel-and-serial’ selection strategy for isolating class-specific oligonucleotide-based receptors (aptamers) in vitro. This strategy first entails parallel selection to selectively enrich cross-reactive binding sequences, followed by serial selection that enriches aptamers binding to a designated target family. As a demonstration, we isolate a class-specific DNA aptamer against a family of designer drugs known as synthetic cathinones. The aptamer binds to 12 diverse synthetic cathinones with nanomolar affinity and does not respond to 11 structurally similar non-target compounds, some of which differ from the cathinone targets by a single atom. This is the first account of an aptamer exhibiting a combination of broad target cross-reactivity, high affinity and remarkable specificity. Leveraging the qualities of this aptamer, instantaneous colorimetric detection of synthetic cathinones at nanomolar concentrations in biological samples is achieved. Our findings significantly expand the binding capabilities of aptamers as class-specific bioreceptors and further demonstrate the power of rationally designed selection strategies for isolating customized aptamers with desired binding profiles. We believe that our aptamer isolation approach can be broadly applied to isolate class-specific aptamers for various small molecule families.


2007 ◽  
Vol 22 (11) ◽  
pp. 2525-2531 ◽  
Author(s):  
Yeon Seok Kim ◽  
Ho Sup Jung ◽  
Toshihiko Matsuura ◽  
Hea Yeon Lee ◽  
Tomoji Kawai ◽  
...  

2020 ◽  
Vol 26 (5) ◽  
pp. 430-443 ◽  
Author(s):  
Sudarat Ledlod ◽  
Supatra Areekit ◽  
Somchai Santiwatanakul ◽  
Kosum Chansiri

In this study, we successfully developed a simple and rapid method for simultaneous detection of Salmonella spp., Listeria monocytogenes, and Escherichia coli using gold nanoparticles and the aptamer aptasensor. We screened 25 specific DNA aptamer candidates against these pathogens using whole-cell Systematic Evolution of Ligands by EXponential enrichment. Among them, Ap6 was selected due to its low energy minimization values of −12.25 and −27.67 kcal/mol derived from MFold and RNAFold analysis, respectively. The assay presented in this study allowed the visual colorimetric detection of labeled colloidal gold nanoparticles as well as determination of UV absorbance at 625 and 525 nm under optimized conditions. The detection limit of this aptasensor was as less as 105 CFU/ml. A random investigation of 50 meat samples, including ham and chicken sausages, collected from the local market revealed 96% accuracy, 96% specificity, and 100% sensitivity of the assay. The colorimetric aptasensor can accomplish one-step detection without pre-culture, DNA extraction, and amplification. Hence, it is an easy, rapid, specific, and qualitative assay that can be used as a point-of-care testing to directly detect multiplex foodborne pathogens.


2017 ◽  
Vol 98 ◽  
pp. 22-28 ◽  
Author(s):  
Ceren Bayraç ◽  
Füsun Eyidoğan ◽  
Hüseyin Avni Öktem

2019 ◽  
Vol 2019 ◽  
pp. 1-7 ◽  
Author(s):  
Sung Hyun Hwang ◽  
Sehan Jeong ◽  
Hyung Joo Choi ◽  
Hyunmin Eun ◽  
Min Geun Jo ◽  
...  

Bisphenol A (BPA) is used in a wide variety of consumer products owing to its beneficial properties of optical clarity, shatter resistance, and heat resistance. However, leached BPA has been shown to disturb the endocrine system and could cause cancer even at low concentrations, which has led to public concern. To reduce the toxic effects caused by BPA, it is important to monitor the BPA levels and its presence in products in a simple, rapid, and on-site manner. Here, we propose a new colorimetric strategy for the simple and rapid detection of BPA employing a DNA aptamer, a cationic surfactant, and gold nanoparticles (AuNPs). Using the developed system, the presence of BPA can be successfully determined based simply on a visually detectable color change from red to blue, triggered by aggregate formation of the AuNPs, which can be monitored even with the naked eye. Under the optimized conditions, this system could detect BPA with excellent selectivity and sensitivity, and its high performance was validated in the receipt obtained from local market and BPA-spiked tap water samples, ensuring its practical applicability. Moreover, the limit of the detection of the system was determined to be 97 nM, which is below the current tolerable daily intake level, demonstrating its suitability for toxicity assessment and on-site quality control in a more economical manner when compared with conventional methods.


RSC Advances ◽  
2021 ◽  
Vol 11 (42) ◽  
pp. 25933-25942
Author(s):  
Mohd Junaedy Osman ◽  
Jahwarhar Izuan Abdul Rashid ◽  
Ong Keat Khim ◽  
Wan Md Zin Wan Yunus ◽  
Siti Aminah Mohd Noor ◽  
...  

We successfully optimized AuNPs, modified DNA aptamer and magnesium sulphate salt to enhance the selectivity and sensitivity for detection of Ac. The accuracy of the detection was also improved by image processing technique.


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