scholarly journals Correction to Sixty Years of the van der Waals and Platteeuw Model for Clathrate Hydrates—A Critical Review from Its Statistical Thermodynamic Basis to Its Extensions and Applications

2021 ◽  
Vol 121 (7) ◽  
pp. 4308-4308
Author(s):  
Fernando de Azevedo Medeiros ◽  
Iuri Soter Viana Segtovich ◽  
Frederico Wanderley Tavares ◽  
Amadeu K. Sum
2020 ◽  
Vol 120 (24) ◽  
pp. 13349-13381
Author(s):  
Fernando de Azevedo Medeiros ◽  
Iuri Soter Viana Segtovich ◽  
Frederico Wanderley Tavares ◽  
Amadeu K. Sum

1997 ◽  
Vol 72 (3) ◽  
pp. 1047-1069 ◽  
Author(s):  
M.K. Gilson ◽  
J.A. Given ◽  
B.L. Bush ◽  
J.A. McCammon

2014 ◽  
Vol 92 (12) ◽  
pp. 2992-3007 ◽  
Author(s):  
Ioannis N. Tsimpanogiannis ◽  
Nikolaos I. Diamantonis ◽  
Ioannis G. Economou ◽  
Nikolaos I. Papadimitriou ◽  
Athanassios K. Stubos

2015 ◽  
Vol 93 (8) ◽  
pp. 864-873 ◽  
Author(s):  
Hana Dureckova ◽  
Tom K. Woo ◽  
Saman Alavi ◽  
John A. Ripmeester

Clathrate hydrate phases of dihalogen molecules have properties that differ from those of other guest molecules of similar size. The water oxygen–chlorine distances in the structure I (sI) Cl2 hydrate are smaller than the sum of the van der Waals radii of oxygen and chlorine. Bromine hydrate forms a unique clathrate hydrate structure that is not seen in other guest substances. In mixed Cl2/Br2 structure I hydrate, the water oxygen–bromine distances are also smaller than the sum of the oxygen and bromine van der Waals radii. We previously studied the structure of three dihalogen clathrate hydrates using single crystal X-ray diffraction and described these structural features in terms of halogen bonding between the dihalogen and water molecules. In this work, we perform molecular dynamics simulations of cubic sI Cl2, mixed Cl2/Br2, and BrCl clathrate hydrate phases. We perform quantum chemical computations on the dihalogen molecules to determine the nature of σ-hole near the halogen atoms. We fit the electrostatic potential of the molecules to point charge models including dummy atoms that represent σ-holes adjacent to the halogen molecules. Molecular dynamics simulations are used to determine the lattice constants, radial distribution functions, and guest dynamics in these phases. We determine the effect of guest size and difference in halogen bonding on the properties of the clathrate hydrate phase. Simulations for the Cl2, BrCl, and mixed Cl2/Br2 hydrates are performed with small cages of the sI clathrate hydrate phases completely full or filled with experimental occupancies with Cl2 guests.


Author(s):  
A. I. Dragan ◽  
C. Crane-Robinson ◽  
P. L. Privalov

AbstractAnalysis of calorimetric and crystallographic information shows that the α-helix is maintained not only by the hydrogen bonds between its polar peptide groups, as originally supposed, but also by van der Waals interactions between tightly packed apolar groups in the interior of the helix. These apolar contacts are responsible for about 60% of the forces stabilizing the folded conformation of the α-helix and their exposure to water on unfolding results in the observed heat capacity increment, i.e. the temperature dependence of the melting enthalpy. The folding process is also favoured by an entropy increase resulting from the release of water from the peptide groups. A similar situation holds for the DNA double helix: calorimetry shows that the hydrogen bonding between conjugate base pairs provides a purely entropic contribution of about 40% to the Gibbs energy while the enthalpic van der Waals interactions between the tightly packed apolar parts of the base pairs provide the remaining 60%. Despite very different structures, the thermodynamic basis of α-helix and B-form duplex stability are strikingly similar. The general conclusion follows that the stability of protein folds is primarily dependent on internal atomic close contacts rather than the hydrogen bonds they contain.


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