Divergent Self-Assembly Pathways to Hierarchically Organized Networks of Isopeptide-Modified Discotics under Kinetic Control

ACS Nano ◽  
2020 ◽  
Vol 14 (5) ◽  
pp. 5491-5505 ◽  
Author(s):  
Michael A. VandenBerg ◽  
Jugal Kishore Sahoo ◽  
Lei Zou ◽  
William McCarthy ◽  
Matthew J. Webber
2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Ali Asghar Hakami Zanjani ◽  
Nicholas P. Reynolds ◽  
Afang Zhang ◽  
Tanja Schilling ◽  
Raffaele Mezzenga ◽  
...  

Abstract By combining atomistic and higher-level modelling with solution X-ray diffraction we analyse self-assembly pathways for the IFQINS hexapeptide, a bio-relevant amyloid former derived from human lysozyme. We verify that (at least) two metastable polymorphic structures exist for this system which are substantially different at the atomistic scale, and compare the conditions under which they are kinetically accessible. We further examine the higher-level polymorphism for these systems at the nanometre to micrometre scales, which is manifested in kinetic differences and in shape differences between structures instead of or as well as differences in the small-scale contact topology. Any future design of structure based inhibitors of the IFQINS steric zipper, or of close homologues such as TFQINS which are likely to have similar structures, should take account of this polymorphic assembly.


Author(s):  
Sung Ho Jung ◽  
Masayuki Takeuchi ◽  
Kazunori Sugiyasu

2022 ◽  
Author(s):  
Mingfei Zhao ◽  
Kacper J. Lachowski ◽  
Shuai Zhang ◽  
Sarah Alamdari ◽  
Janani Sampath ◽  
...  

2019 ◽  
Vol 141 (50) ◽  
pp. 19669-19676 ◽  
Author(s):  
Tomoki Tateishi ◽  
Satoshi Takahashi ◽  
Atsushi Okazawa ◽  
Vicente Martí-Centelles ◽  
Jianzhu Wang ◽  
...  

ACS Nano ◽  
2020 ◽  
Vol 14 (5) ◽  
pp. 5348-5359 ◽  
Author(s):  
Abhishek B. Rao ◽  
James Shaw ◽  
Andreas Neophytou ◽  
Daniel Morphew ◽  
Francesco Sciortino ◽  
...  

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Kuhan Chandru ◽  
Tony Z. Jia ◽  
Irena Mamajanov ◽  
Niraja Bapat ◽  
H. James Cleaves

Abstract Prebiotic chemists often study how modern biopolymers, e.g., peptides and nucleic acids, could have originated in the primitive environment, though most contemporary biomonomers don’t spontaneously oligomerize under mild conditions without activation or catalysis. However, life may not have originated using the same monomeric components that it does presently. There may be numerous non-biological (or “xenobiological”) monomer types that were prebiotically abundant and capable of facile oligomerization and self-assembly. Many modern biopolymers degrade abiotically preferentially via processes which produce thermodynamically stable ring structures, e.g. diketopiperazines in the case of proteins and 2′, 3′-cyclic nucleotide monophosphates in the case of RNA. This weakness is overcome in modern biological systems by kinetic control, but this need not have been the case for primitive systems. We explored here the oligomerization of a structurally diverse set of prebiotically plausible xenobiological monomers, which can hydrolytically interconvert between cyclic and acyclic forms, alone or in the presence of glycine under moderate temperature drying conditions. These monomers included various lactones, lactams and a thiolactone, which varied markedly in their stability, propensity to oligomerize and apparent modes of initiation, and the oligomeric products of some of these formed self-organized microscopic structures which may be relevant to protocell formation.


ACS Nano ◽  
2020 ◽  
Vol 14 (4) ◽  
pp. 4595-4600 ◽  
Author(s):  
Joon Suk Oh ◽  
Gi-Ra Yi ◽  
David J. Pine

2013 ◽  
Vol 135 (50) ◽  
pp. 18722-18725 ◽  
Author(s):  
Franziska Fennel ◽  
Steffen Wolter ◽  
Zengqi Xie ◽  
Per-Arno Plötz ◽  
Oliver Kühn ◽  
...  

2017 ◽  
Vol 56 (11) ◽  
pp. 2974-2978 ◽  
Author(s):  
Keita Ishiba ◽  
Takao Noguchi ◽  
Hiroaki Iguchi ◽  
Masa-aki Morikawa ◽  
Kenji Kaneko ◽  
...  

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