Kinetics of bisulfite-induced cytosine deamination in single-stranded DNA

Biochemistry ◽  
1993 ◽  
Vol 32 (14) ◽  
pp. 3535-3539 ◽  
Author(s):  
Hong Chen ◽  
Barbara Ramsay Shaw
2021 ◽  
Vol 120 (3) ◽  
pp. 219a
Author(s):  
Claire Albrecht ◽  
Brett A. Israels ◽  
Chloe Chvatal ◽  
Peter H. von Hippel ◽  
Andrew H. Marcus

2008 ◽  
Vol 1092 ◽  
Author(s):  
Ricardo Cabeca ◽  
D. M.F. Prazeres ◽  
V. Chu ◽  
J. P. Conde

AbstractThe on-chip application of single, sub-ms voltage pulses promotes the immobilization of single stranded DNA (ssDNA) probes from a solution to a chemically functionalized SiO2 surface and as well as the hybridization between ssDNA targets from a solution to covalently immobilized ssDNA probes (E-assisted DNA reactions). Compared to diffusion-based surface reactions (in the absence of the applied electric field), an improvement of several orders of magnitude in the kinetics of the immobilization and hybridization reactions is observed with low amplitude (below 2 V) and short duration (100 ns to 1 ms) voltage pulses. E-assisted DNA reactions are demonstrated using mm-size macroelectrodes and then optimized using μm-size microelectrodes.


2018 ◽  
Vol 39 (1) ◽  
Author(s):  
Sachini U. Siriwardena ◽  
Madusha L. W. Perera ◽  
Vimukthi Senevirathne ◽  
Jessica Stewart ◽  
Ashok S. Bhagwat

ABSTRACTPhorbol 12-myristate 13-acetate (PMA) promotes skin cancer in rodents. The mutations found in murine tumors are similar to those found in human skin cancers, and PMA promotes proliferation of human skin cells. PMA treatment of human keratinocytes increases the synthesis of APOBEC3A, an enzyme that converts cytosines in single-stranded DNA to uracil, and mutations in a variety of human cancers are attributed to APOBEC3A or APOBEC3B expression. We tested here the possibility that induction of APOBEC3A by PMA causes genomic accumulation of uracils that may lead to such mutations. When a human keratinocyte cell line was treated with PMA, both APOBEC3A and APOBEC3B gene expression increased, anti-APOBEC3A/APOBEC3B antibody bound a protein(s) in the nucleus, and nuclear extracts displayed cytosine deamination activity. Surprisingly, there was little increase in genomic uracils in PMA-treated wild-type or uracil repair-defective cells. In contrast, cells transfected with a plasmid expressing APOBEC3A acquired more genomic uracils. Unexpectedly, PMA treatment, but not APOBEC3A plasmid transfection, caused a cessation in cell growth. Hence, a reduction in single-stranded DNA at replication forks may explain the inability of PMA-induced APOBEC3A/APOBEC3B to increase genomic uracils. These results suggest that the proinflammatory PMA is unlikely to promote extensive APOBEC3A/APOBEC3B-mediated cytosine deaminations in human keratinocytes.


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