Depolymerization of alginate by an extracellular alginate lyase from a marine bacterium: substrate specificity and accumulation of reaction products

Biochemistry ◽  
1986 ◽  
Vol 25 (26) ◽  
pp. 8391-8396 ◽  
Author(s):  
Tony Romeo ◽  
James F. Preston
2006 ◽  
Vol 8 (5) ◽  
pp. 481-490 ◽  
Author(s):  
Hitoshi Kawamoto ◽  
Akio Horibe ◽  
Yasunari Miki ◽  
Takayuki Kimura ◽  
Katsunori Tanaka ◽  
...  

2016 ◽  
Vol 82 (14) ◽  
pp. 4340-4349 ◽  
Author(s):  
Damao Wang ◽  
Do Hyoung Kim ◽  
Nari Seo ◽  
Eun Ju Yun ◽  
Hyun Joo An ◽  
...  

ABSTRACTIn this study, we characterized Gly5M, originating from a marine bacterium, as a novel β-1,3-1,6-endoglucanase in glycoside hydrolase family 5 (GH5) in the Carbohydrate-Active enZyme database. Thegly5Mgene encodes Gly5M, a newly characterized enzyme from GH5 subfamily 47 (GH5_47) inSaccharophagus degradans2-40T. Thegly5Mgene was cloned and overexpressed inEscherichia coli. Through analysis of the enzymatic reaction products by thin-layer chromatography, high-performance liquid chromatography, and matrix-assisted laser desorption ionization–tandem time of flight mass spectrometry, Gly5M was identified as a novel β-1,3-endoglucanase (EC 3.2.1.39) and bacterial β-1,6-glucanase (EC 3.2.1.75) in GH5. The β-1,3-endoglucanase and β-1,6-endoglucanase activities were detected by using laminarin (a β-1,3-glucan with β-1,6-glycosidic linkages derived from brown macroalgae) and pustulan (a β-1,6-glucan derived from fungal cell walls) as the substrates, respectively. This enzyme also showed transglycosylase activity toward β-1,3-oligosaccharides when laminarioligosaccharides were used as the substrates. Since laminarin is the major form of glucan storage in brown macroalgae, Gly5M could be used to produce glucose and laminarioligosaccharides, using brown macroalgae, for industrial purposes.IMPORTANCEIn this study, we have discovered a novel β-1,3-1,6-endoglucanase with a unique transglycosylase activity, namely, Gly5M, from a marine bacterium,Saccharophagus degradans2-40T. Gly5M was identified as the newly found β-1,3-endoglucanase and bacterial β-1,6-glucanase in GH5. Gly5M is capable of cleaving glycosidic linkages of both β-1,3-glucans and β-1,6-glucans. Gly5M also possesses a transglycosylase activity toward β-1,3-oligosacchrides. Due to the broad specificity of Gly5M, this enzyme can be used to produce glucose or high-value β-1,3- and/or β-1,6-oligosaccharides.


Marine Drugs ◽  
2018 ◽  
Vol 16 (3) ◽  
pp. 86 ◽  
Author(s):  
Peng Chen ◽  
Yueming Zhu ◽  
Yan Men ◽  
Yan Zeng ◽  
Yuanxia Sun

2005 ◽  
Vol 388 (2) ◽  
pp. 515-525 ◽  
Author(s):  
Peter BENCÚR ◽  
Herta STEINKELLNER ◽  
Barbara SVOBODA ◽  
Jan MUCHA ◽  
Richard STRASSER ◽  
...  

XylT (β1,2-xylosyltransferase) is a unique Golgi-bound glycosyltransferase that is involved in the biosynthesis of glycoprotein-bound N-glycans in plants. To delineate the catalytic domain of XylT, a series of N-terminal deletion mutants was heterologously expressed in insect cells. Whereas the first 54 residues could be deleted without affecting the catalytic activity of the enzyme, removal of an additional five amino acids led to the formation of an inactive protein. Characterization of the N-glycosylation status of recombinant XylT revealed that all three potential N-glycosylation sites of the protein are occupied by N-linked oligosaccharides. However, an unglycosylated version of the enzyme displayed substantial catalytic activity, demonstrating that N-glycosylation is not essential for proper folding of XylT. In contrast with most other glycosyltransferases, XylT is enzymatically active in the absence of added metal ions. This feature is not due to any metal ion directly associated with the enzyme. The precise acceptor substrate specificity of XylT was assessed with several physiologically relevant compounds and the xylosylated reaction products were subsequently tested as substrates of other Golgi-resident glycosyltransferases. These experiments revealed that the substrate specificity of XylT permits the enzyme to act at multiple stages of the plant N-glycosylation pathway.


1992 ◽  
Vol 58 (3) ◽  
pp. 533-538 ◽  
Author(s):  
Chao-Huang Tseng ◽  
Kuniko Yamaguchi ◽  
Manabu Kitamikado

DNA Sequence ◽  
2004 ◽  
Vol 15 (5-6) ◽  
pp. 344-350 ◽  
Author(s):  
Feng Han ◽  
Qian-hong Gong ◽  
Kai Song ◽  
Jing-bao Li ◽  
Wen-gong Yu

2019 ◽  
Vol 85 (18) ◽  
Author(s):  
Fang Zhao ◽  
Hai-Yan Cao ◽  
Long-Sheng Zhao ◽  
Yi Zhang ◽  
Chun-Yang Li ◽  
...  

ABSTRACTAs classified by the Carbohydrate-Active Enzymes (CAZy) database, enzymes in glycoside hydrolase (GH) family 10 (GH10) are all monospecific or bifunctional xylanases (except a tomatinase), and no endo-β-1,4-glucanase has been reported in the family. Here, we identifiedArcticibacterium luteifluviistationiscarboxymethyl cellulase (AlCMCase) as a GH10 endo-β-1,4-glucanase.AlCMCase originated from an Arctic marine bacterium,Arcticibacterium luteifluviistationisSM1504T. It shows low identity (<35%) with other GH10 xylanases. The gene encodingAlCMCase was overexpressed inEscherichia coli. Biochemical characterization showed that recombinantAlCMCase is a cold-adapted and salt-tolerant enzyme.AlCMCase hydrolyzes cello- and xylo-configured substrates via an endoaction mode. However, in comparison to its significant cellulase activity, the xylanase activity ofAlCMCase is negligible. Correspondingly,AlCMCase has remarkable binding capacity for cello-oligosaccharides but no obvious binding capacity for xylo-oligosaccharides.AlCMCase and its homologs are grouped into a branch separate from other GH10 xylanases in a phylogenetic tree, and two homologs also displayed the same substrate specificity asAlCMCase. These results suggest thatAlCMCase and its homologs form a novel subfamily of GH10 enzymes that have robust endo-β-1,4-glucanase activity. In addition, given the cold-adapted and salt-tolerant characters ofAlCMCase, it may be a candidate biocatalyst under certain industrial conditions, such as low temperature or high salinity.IMPORTANCECellulase and xylanase have been widely used in the textile, pulp and paper, animal feed, and food-processing industries. Exploring novel cellulases and xylanases for biocatalysts continues to be a hot issue. Enzymes derived from the polar seas might have novel hydrolysis patterns, substrate specificities, or extremophilic properties that have great potential for both fundamental research and industrial applications. Here, we identified a novel cold-adapted and salt-tolerant endo-β-1,4-glucanase,AlCMCase, from an Arctic marine bacterium. It may be useful in certain industrial processes, such as under low temperature or high salinity. Moreover,AlCMCase is a bifunctional representative of glycoside hydrolase (GH) family 10 that preferentially hydrolyzes β-1,4-glucans. With its homologs, it represents a new subfamily in this family. Thus, this study sheds new light on the substrate specificity of GH10.


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