Development of a Method for the Genetic Identification of Commercial Bivalve Species Based on Mitochondrial 18S rRNA Sequences

2009 ◽  
Vol 57 (2) ◽  
pp. 495-502 ◽  
Author(s):  
Montserrat Espiñeira ◽  
Nerea González-Lavín ◽  
Juan M. Vieites ◽  
Francisco J. Santaclara
2014 ◽  
Vol 2 (42) ◽  
pp. 291-291
Author(s):  
Z.B. Tekebayeva ◽  
A.B. Shevtsov ◽  
X.K. Rakhymzhan ◽  
K.A. Aituganov ◽  
G.A. Babayeva ◽  
...  

1992 ◽  
Vol 70 (9) ◽  
pp. 1738-1746 ◽  
Author(s):  
Jinliang Li ◽  
I. Brent Heath

To clarify the phylogenetic relationships of the Chytridiomycota and the anaerobic fungi from the rumen and caecum of herbivorous animals, we analyzed the partial 18S rRNA sequences from 28 species ranging from protists to mammals and internal transcribed spacer 1 (ITS1) and its adjacent sequences from four gut fungi and one chytrid by using three algorithms from the Phylogeny Inference Package (PHYLIP). To get the confidence limits for each branch, we applied bootstrapping for each algorithm. Our analysis on partial 18S rRNA sequences shows that the Chytridiomycota are clustered with other fungi with 98, 76, and 30% confidences in the Fitch–Margoliash, neighbour-joining, and maximum parsimony algorithms. None of these three algorithms place any of 17 protists from 12 phyla with the fungi, including the chytrids. The same analysis also shows that the Spizellomycetales and Chytridiales cluster with the gut fungi but does not identify which order is closest to them. These results suggest that the Chytridiomycota, including the gut fungi, are indeed fungi but the gut fungi might not belong to the Spizellomycetales. The phylogenetic trees generated by the above three algorithms, plus the maximum likelihood algorithm, based on ITS1 and its adjacent regions show that Anaeromyces is more distant from Orpinomyces, Neocallimastix, and Piromyces. However, they failed to determine the relationships among the last three genera. Key words: Chytridiomycota, gut fungi, rumen fungi, phylogeny, rRNA sequences.


2008 ◽  
Vol 22 (16) ◽  
pp. 2242-2255 ◽  
Author(s):  
J. Dong ◽  
J. S. Nanda ◽  
H. Rahman ◽  
M. R. Pruitt ◽  
B.-S. Shin ◽  
...  

2011 ◽  
Vol 63 (3) ◽  
pp. 281-288 ◽  
Author(s):  
K. M. Singh ◽  
A. K. Tripathi ◽  
P. R. Pandya ◽  
D. N. Rank ◽  
R. K. Kothari ◽  
...  

Parasitology ◽  
1998 ◽  
Vol 117 (4) ◽  
pp. 383-391 ◽  
Author(s):  
M. FERNANDEZ ◽  
D. T. J. LITTLEWOOD ◽  
A. LATORRE ◽  
J. A. RAGA ◽  
D. ROLLINSON

Traditionally, the family Campulidae has been associated either with the family Fasciolidae, parasites of ruminants, or the Acanthocolpidae, parasites of fishes, based on morphological similarities. Since morphology does not seem to resolve clearly the problem of the relationships of campulids, we have used the sequences of the 18S rRNA gene of the campulids Zalophotrema hepaticum, Campula oblonga and Nasitrema globicephalae, the fasciolid Fasciola hepatica, the acanthocolpid Stephanostomum baccatum and the outgroup Schistosoma mansoni to infer a phylogeny. Maximum parsimony and neighbour-joining methods were applied. Both methods indicated that campulids are closer to acanthocolpids than fasciolids. In order to confirm this relationship, we generated a second phylogeny using all the partial sequences of the 18S published for trematodes: Lobatostoma manteri, Echinostoma caproni, Calicophoron calicophorum, Tetracerasta blepta, Gyliauchen sp. and Opistorchis viverrini, plus those mentioned above, and Dicrocoelium dendriticum. The aspidogastrean L. manteri was used as the outgroup. Results were identical to the first analysis. According to this and the most recent Digenean phylogeny, which considers campulids and acanthocolpids as sister groups, we suggest that a common origin for these 2 groups would imply a host-switching process. The life-cycle of acanthocolpids includes marine gastropods as first intermediate hosts, and fishes as second intermediate and definitive hosts. In this context, the hypothesis would be that trematodes whose cycle ended in fishes were able to switch to mammalian hosts.


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