scholarly journals Investigating Hydrophilic Pores in Model Lipid Bilayers Using Molecular Simulations: Correlating Bilayer Properties with Pore-Formation Thermodynamics

Langmuir ◽  
2015 ◽  
Vol 31 (24) ◽  
pp. 6615-6631 ◽  
Author(s):  
Yuan Hu ◽  
Sudipta Kumar Sinha ◽  
Sandeep Patel
2018 ◽  
Vol 63 (1) ◽  
Author(s):  
Gabriela Seydlová ◽  
Albert Sokol ◽  
Petra Lišková ◽  
Ivo Konopásek ◽  
Radovan Fišer

ABSTRACT Daptomycin is a calcium-dependent lipodepsipeptide antibiotic clinically used to treat serious infections caused by Gram-positive pathogens. Its precise mode of action is somewhat controversial; the biggest issue is daptomycin pore formation, which we directly investigated here. We first performed a screening experiment using propidium iodide (PI) entry to Bacillus subtilis cells and chose the optimum and therapeutically relevant conditions (10 µg/ml daptomycin and 1.25 mM CaCl2) for the subsequent analyses. Using conductance measurements on planar lipid bilayers, we show that daptomycin forms nonuniform oligomeric pores with conductance ranging from 120 pS to 14 nS. The smallest conductance unit is probably a dimer; however, tetramers and pentamers occur in the membrane most frequently. Moreover, daptomycin pore-forming activity is exponentially dependent on the applied membrane voltage. We further analyzed the membrane-permeabilizing activity in B. subtilis cells using fluorescence methods [PI and DiSC3(5)]. Daptomycin most rapidly permeabilizes cells with high initial membrane potential and dissipates it within a few minutes. Low initial membrane potential hinders daptomycin pore formation.


Cryobiology ◽  
2007 ◽  
Vol 55 (3) ◽  
pp. 375-376
Author(s):  
Dinesh Pinisetty ◽  
Dorel Moldovan ◽  
Ram Devireddy

2006 ◽  
Vol 396 (2) ◽  
pp. 381-389 ◽  
Author(s):  
Olivier Joubert ◽  
Gabriella Viero ◽  
Daniel Keller ◽  
Eric Martinez ◽  
Didier A. Colin ◽  
...  

The staphylococcal α-toxin and bipartite leucotoxins belong to a single family of pore-forming toxins that are rich in β-strands, although the stoichiometry and electrophysiological characteristics of their pores are different. The different known structures show a common β-sandwich domain that plays a key role in subunit–subunit interactions, which could be targeted to inhibit oligomerization of these toxins. We used several cysteine mutants of both HlgA (γ-haemolysin A) and HlgB (γ-haemolysin B) to challenge 20 heterodimers linked by disulphide bridges. A new strategy was developed in order to obtain a good yield for S-S bond formation and dimer stabilization. Functions of the pores formed by 14 purified dimers were investigated on model membranes, i.e. planar lipid bilayers and large unilamellar vesicles, and on target cells, i.e. rabbit and human red blood cells and polymorphonuclear neutrophils. We observed that dimers HlgA T28C–HlgB N156C and HlgA T21C–HlgB T157C form pores with similar characteristics as the wild-type toxin, thus suggesting that the mutated residues are facing one another, allowing pore formation. Our results also confirm the octameric stoichiometry of the leucotoxin pores, as well as the parity of the two monomers in the pore. Correctly assembled heterodimers thus constitute the minimal functional unit of leucotoxins. We propose amino acids involved in interactions at one of the two interfaces for an assembled leucotoxin.


2016 ◽  
Vol 110 (3) ◽  
pp. 86a ◽  
Author(s):  
Pouyan Khakbaz ◽  
Jeffery Klauda

Soft Matter ◽  
2010 ◽  
Vol 6 (11) ◽  
pp. 2517 ◽  
Author(s):  
Mahmoud Soliman ◽  
Rujikan Nasanit ◽  
Stephanie Allen ◽  
Martyn C. Davies ◽  
Simon S. Briggs ◽  
...  

1988 ◽  
Vol 174 (1) ◽  
pp. 199-205 ◽  
Author(s):  
Katharina BAUER ◽  
Angela SCHMID ◽  
Winfried BOOS ◽  
Roland BENZ ◽  
Jan TOMMASSEN

2002 ◽  
Vol 277 (51) ◽  
pp. 49360-49365 ◽  
Author(s):  
Gorka Basañez ◽  
Juanita C. Sharpe ◽  
Jennifer Galanis ◽  
Teresa B. Brandt ◽  
J. Marie Hardwick ◽  
...  

During apoptosis, Bax-type proteins permeabilize the outer mitochondrial membrane to release intermembrane apoptogenic factors into the cytosol via a poorly understood mechanism. We have proposed that Bax and ΔN76Bcl-xL(the Bax-like cleavage fragment of Bcl-xL) function by forming pores that are at least partially composed of lipids (lipidic pore formation). Since the membrane monolayer must bend during lipidic pore formation, we here explore the effect of intrinsic membrane monolayer curvature on pore formation. Nonlamellar lipids with positive intrinsic curvature such as lysophospholipids promoted membrane permeabilization, whereas nonlamellar lipids with negative intrinsic curvature such as diacylglycerol and phosphatidylethanolamine inhibited membrane permeabilization. The differential effects of nonlamellar lipids on membrane permeabilization were not correlated with lipid-induced changes in membrane binding or insertion of Bax or ΔN76Bcl-xL. Altogether, these results are consistent with a model whereby Bax-type proteins change the bending propensity of the membrane to form pores comprised at least in part of lipids in a structure of net positive monolayer curvature.


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