scholarly journals Impact of temporal data resolution on parameter inference and model identification in conceptual hydrological modeling: Insights from an experimental catchment

2011 ◽  
Vol 47 (5) ◽  
Author(s):  
Dmitri Kavetski ◽  
Fabrizio Fenicia ◽  
Martyn P. Clark
2018 ◽  
Vol 22 (11) ◽  
pp. 5947-5965 ◽  
Author(s):  
Linh Hoang ◽  
Rajith Mukundan ◽  
Karen E. B. Moore ◽  
Emmet M. Owens ◽  
Tammo S. Steenhuis

Abstract. Uncertainty in hydrological modeling is of significant concern due to its effects on prediction and subsequent application in watershed management. Similar to other distributed hydrological models, model uncertainty is an issue in applying the Soil and Water Assessment Tool (SWAT). Previous research has shown how SWAT predictions are affected by uncertainty in parameter estimation and input data resolution. Nevertheless, little information is available on how parameter uncertainty and output uncertainty are affected by input data of varying complexity. In this study, SWAT-Hillslope (SWAT-HS), a modified version of SWAT capable of predicting saturation-excess runoff, was applied to assess the effects of input data with varying degrees of complexity on parameter uncertainty and output uncertainty. Four digital elevation model (DEM) resolutions (1, 3, 10 and 30 m) were tested for their ability to predict streamflow and saturated areas. In a second analysis, three soil maps and three land use maps were used to build nine SWAT-HS setups from simple to complex (fewer to more soil types/land use classes), which were then compared to study the effect of input data complexity on model prediction/output uncertainty. The case study was the Town Brook watershed in the upper reaches of the West Branch Delaware River in the Catskill region, New York, USA. Results show that DEM resolution did not impact parameter uncertainty or affect the simulation of streamflow at the watershed outlet but significantly affected the spatial pattern of saturated areas, with 10m being the most appropriate grid size to use for our application. The comparison of nine model setups revealed that input data complexity did not affect parameter uncertainty. Model setups using intermediate soil/land use specifications were slightly better than the ones using simple information, while the most complex setup did not show any improvement from the intermediate ones. We conclude that improving input resolution and complexity may not necessarily improve model performance or reduce parameter and output uncertainty, but using multiple temporal and spatial observations can aid in finding the appropriate parameter sets and in reducing prediction/output uncertainty.


2014 ◽  
Vol 278 ◽  
pp. 1-8 ◽  
Author(s):  
Valeria Montalto ◽  
Gianluca Sarà ◽  
Paolo Michele Ruti ◽  
Alessandro Dell’Aquila ◽  
Brian Helmuth

Author(s):  
Frits Veerman ◽  
Nikola Popović ◽  
Carsten Marr

Abstract Stochastic gene expression in regulatory networks is conventionally modelled via the chemical master equation (CME). As explicit solutions to the CME, in the form of so-called propagators, are oftentimes not readily available, various approximations have been proposed. A recently developed analytical method is based on a separation of time scales that assumes significant differences in the lifetimes of mRNA and protein in the network, allowing for the efficient approximation of propagators from asymptotic expansions for the corresponding generating functions. Here, we showcase the applicability of that method to simulated data from a ‘telegraph’ model for gene expression that is extended with an autoregulatory mechanism. We demonstrate that the resulting approximate propagators can be applied successfully for parameter inference in the non-regulated model; moreover, we show that, in the extended autoregulated model, autoactivation or autorepression may be refuted under certain assumptions on the model parameters. These results indicate that our approach may allow for successful parameter inference and model identification from longitudinal single cell data.


2018 ◽  
Author(s):  
Frits Veerman ◽  
Nikola Popović ◽  
Carsten Marr

ABSTRACTStochastic gene expression in regulatory networks is conventionally modelled via the Chemical Master Equation (CME). As explicit solutions to the CME, in the form of so-called propagators, are oftentimes not readily available, various approximations have been proposed. A recently developed analytical method is based on a separation of scales that assumes significant differences in the lifetimes of mRNA and protein in the network, allowing for the efficient approximation of propagators from asymptotic expansions for the corresponding generating functions. Here, we showcase the applicability of that method to simulated data from a ‘telegraph’ model for gene expression that is extended with an autoregulatory mechanism. We demonstrate that the resulting approximate propagators can be applied successfully for Bayesian parameter inference in the non-regulated model; moreover, we show that, in the extended autoregulated model, autoactivation or autorepression may be refuted under certain assumptions on the model parameters. Our results indicate that the method showcased here may allow for successful parameter inference and model identification from longitudinal single cell data.


2012 ◽  
Vol 215 (8) ◽  
pp. 1422-1424 ◽  
Author(s):  
M. R. Kearney ◽  
A. Matzelle ◽  
B. Helmuth

2012 ◽  
Vol 215 (6) ◽  
pp. 922-933 ◽  
Author(s):  
M. R. Kearney ◽  
A. Matzelle ◽  
B. Helmuth

2010 ◽  
Vol 82 (4) ◽  
pp. 1107-1126 ◽  
Author(s):  
Selene Loibel ◽  
Marinho G. Andrade ◽  
João B.R. do Val ◽  
Alfredo R. de Freitas

In this work we study the problem of modeling identification of a population employing a discrete dynamic model based on the Richards growth model. The population is subjected to interventions due to consumption, such as hunting or farming animals. The model identification allows us to estimate the probability or the average time for a population number to reach a certain level. The parameter inference for these models are obtained with the use of the likelihood profile technique as developed in this paper. The identification method here developed can be applied to evaluate the productivity of animal husbandry or to evaluate the risk of extinction of autochthon populations. It is applied to data of the Brazilian beef cattle herd population, and the the population number to reach a certain goal level is investigated.


2020 ◽  
Vol 12 (6) ◽  
pp. 947
Author(s):  
Nan-Jay Su ◽  
Chia-Hao Chang ◽  
Ya-Ting Hu ◽  
Wei-Chuan Chiang ◽  
Chen-Te Tseng

Swordfish, Xiphias gladius (Linnaeus, 1758), is a commercially important species that is widely distributed throughout three oceans. This species inhabits oceanic waters with preferred environmental ranges and migrates vertically to the surface layer for feeding. However, the spatial distribution pattern and habitat preferences of swordfish have been rarely studied in the Pacific Ocean due to the wide geographic range of this species. This study examined the spatial distribution and preferred ranges of environmental variables for swordfish using two approaches, generalized additive models and habitat suitability index methods, with different spatio-temporal data resolution scales. Results indicated that sea surface temperature is the most important factor determining swordfish spatial distribution. Habitat spatial pattern and preferred environmental ranges, estimated using various modeling approaches, were robust relative to the spatio-temporal data resolution scales. The models were validated by examining the consistency between predictions and untrained actual observations, which all predicted a high relative density of swordfish in the tropical waters of the central Pacific Ocean, with no obvious seasonal movement. Results from this study, based on fishery and remote sensing data with wide spatial coverage, could benefit the conservation and management of fisheries for highly migratory species such as swordfish and tuna.


2006 ◽  
Vol 319 (1-4) ◽  
pp. 36-50 ◽  
Author(s):  
Roshan Shrestha ◽  
Yasuto Tachikawa ◽  
Kaoru Takara

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