Molecular evidence for phylogenetic relationships among buntings and American sparrows (Emberizidae)

2001 ◽  
Vol 32 (2) ◽  
pp. 95-101 ◽  
Author(s):  
Alessandro Grapputo ◽  
Andrea Pilastro ◽  
Allan J. Baker ◽  
Guglielmo Marin
Keyword(s):  
Phylogenetic Relationships ◽  
Molecular Evidence

Morphological and molecular evidence of some Minuartia species (Caryophyllaceae) from Turkey, with a desciption of a new species

Phytotaxa ◽  
2019 ◽  
Vol 391 (2) ◽  
pp. 122 ◽  
Author(s):  
MURAT KOÇ ◽  
ERGIN HAMZAOĞLU ◽  
AHMET AKSOY
Keyword(s):  
New Species ◽  
Dna Sequences ◽  
Related Species ◽  
Phylogenetic Relationships ◽  
Morphological Data ◽  
Molecular Evidence ◽  
A New Species

The genus Minuartia is represented in Turkey by 34 taxa. Some interesting specimens were collected from Antalya province, and examined. These specimens resemble Minuartia meyeri, and M. multinervis from which differ by characters (macro-, and micromorphological) of inflorescence, alar pedicels, petals, sepals, capsules and seeds. Moreover, by using the DNA sequences of the ITS genes, phylogenetic relationships between this collected species, and the related species were investigated. As a result of the evaluation of molecular, and morphological data, we proposed to described the population from Antalya as a new species for the science. A description, pictures, distribution, habitat, and IUCN category are given.

scholarly journals Revision of Bairdiella (Sciaenidae: Perciformes) from the western South Atlantic, with insights into its diversity and biogeography

2019 ◽  
Vol 17 (1) ◽  
Author(s):  
Alexandre Pires Marceniuk ◽  
Eduardo Garcia Molina ◽  
Rodrigo Antunes Caires ◽  
Matheus Marcos Rotundo ◽  
Wolmar Benjamin Wosiacki ◽  
...  
Keyword(s):  
New Species ◽  
Phylogenetic Relationships ◽  
Species Complex ◽  
Atlantic Coast ◽  
Geographic Range ◽  
Molecular Evidence ◽  
Western Atlantic ◽  
Taxonomic History ◽  
Inshore Waters ◽  
A New Species

ABSTRACT The sciaenid genus Bairdiella comprises a group of relatively small fishes found in inshore waters and estuaries of the western Atlantic and eastern Pacific. Despite recent analyses of the phylogenetic relationships of Bairdiella, there has been no comprehensive revision of the alpha taxonomy of the species of the genus. Bairdiella ronchus from the western Atlantic, has a complex taxonomic history, with four junior synonyms recognized. Based on morphological and molecular evidence, this study indicates that B. ronchus represents a species complex. The species is therefore redescribed and its geographic range is redefined. Bairdiella veraecrucis, which is currently recognized as a junior synonym of B. ronchus, is revalidated, and a new species of the genus is described from the Atlantic coast of Brazil. Finally, inferences are made on the diversity and biogeography of the B. ronchus species complex.

Towards a new classification of tribe Stachydeae (Lamiaceae): naming clades using molecular evidence

2019 ◽  
Vol 190 (4) ◽  
pp. 345-358 ◽  
Author(s):  
Yasaman Salmaki ◽  
Günther Heubl ◽  
Maximilian Weigend
Keyword(s):  
Ribosomal Dna ◽  
Dna Sequences ◽  
Phylogenetic Relationships ◽  
Nuclear Ribosomal Dna ◽  
Molecular Evidence ◽  
New Classification ◽  
Formal Classification ◽  
Phylogenetic Nomenclature

AbstractStachydeae, comprising c. 470 species, are one of the most diverse and taxonomically puzzling groups in Lamioideae. In the present study, the phylogenetic relationships in the Eurystachys clade (a phylogenetic name for all genera attributed to Stachydeae except Melittis) were reconstructed utilizing nuclear ribosomal DNA sequences (nrETS, 5S-NTS) from 148 accessions in 12 genera. Our phylogenetic results recovered Stachys as paraphyletic with numerous traditionally recognized genera nested in it. A broadly defined Eurystachys clade, however, was monophyletic. Unlike previous studies, the present study was able to resolve the group into 12 well-supported clades, named here as (1) Eriostomum, (2) Stachys, (3) Prasium, (4) Setifolia, (5) Distantes, (6) Burgsdorfia, (7) Hesiodia, (8) Empedoclia, (9) Sideritis, (10) Marrubiastrum, (11) Swainsoniana and (12) Olisia. These 12 clades were formally named in a phylogenetic nomenclature for the Eurystachys clade. Several infrageneric units were retrieved as monophyletic, namely Sideritis sections Burgsdorfia, Empedoclia and Hesiodia, Sideritis subgenus Marrubiastrum and Stachys sections Eriostomum (including Stachys section Mucronata) and Setifolia. The findings of this study also provide the basis for a future formal classification, with two options: (1) splitting of the Eurystachys clade into 12 monophyletic genera, all of them based on pre-existing genus names and redefined to encompass additional taxa, but without clear morphological apomorphies; or (2) lumping of all segregates into a broadly defined Stachys, including widely recognized and well-defined segregates such as Prasium and Sideritis.

On the nomenclature of Bathyergidae and Fukomys n. gen. (Mammalia: Rodentia)

Zootaxa ◽  
2006 ◽  
Vol 1142 (1) ◽  
pp. 51-55 ◽  
Author(s):  
DIETER KOCK ◽  
COLLEEN M. INGRAM ◽  
LAURENCE J. FRABOTTA ◽  
RODNEY L. HONEYCUTT ◽  
HYNEK BURDA
Keyword(s):  
Literature Review ◽  
Phylogenetic Relationships ◽  
Species Group ◽  
Junior Synonym ◽  
Molecular Evidence ◽  
Generic Level ◽  
The Family ◽  
Taxonomic History ◽  
History Of ◽  
Subsequent Literature

Recently, in an examination of the phylogenetic relationships among the mole-rats of the family Bathyergidae (Mammalia: Rodentia), Ingram et al. (2004) documented molecular evidence for the recognition of the Cryptomys mechowii species group at the generic level and resurrected the name Coetomys Gray, 1864 for this group. Subsequent literature review revealed that Coetomys is not available to this species group, being a junior synonym of Cryptomys Gray, 1864. Here, we describe and diagnose Fukomys genus novum. In addition, we discuss the taxonomic history of this group in an attempt to reduce the nomenclatural confusion that has plagued studies of the Bathyergidae for over a century.

Cortinarius rapaceoides, a new record for Turkey

Mycotaxon ◽  
2020 ◽  
Vol 135 (3) ◽  
pp. 559-568
Author(s):  
Meryem Senay Şengul Demirak ◽  
Hakan Işik
Keyword(s):  
Phylogenetic Relationships ◽  
Internal Transcribed Spacer ◽  
New Record ◽  
Sequence Data ◽  
Large Subunit ◽  
Morphological Description ◽  
Molecular Evidence

A macrofungus collected from Akbelen village in Tokat has been identified based on molecular evidence and morphology as Cortinarius rapaceoides, a new record from Turkey. Sequence data generated from the nuclear ribosomal internal transcribed spacer and ribosomal large subunit regions were deposited in GenBank and used to determine phylogenetic relationships within Cortinarius subg. Phlegmacium. A morphological description, illustrations, and phylogeny of the Turkish C. rapaceoides are provided.

On the status of the snake genera Erythrolamprus Boie, Liophis Wagler and Lygophis Fitzinger (Serpentes, Xenodontinae)

Zootaxa ◽  
2009 ◽  
Vol 2173 (1) ◽  
pp. 66-68 ◽  
Author(s):  
FELIPE F. CURCIO ◽  
VÍTOR DE Q. PIACENTINI ◽  
DANIEL S. FERNANDES
Keyword(s):  
Phylogenetic Relationships ◽  
Molecular Evidence ◽  
South American ◽  
Phylogenetic Studies ◽  
The Status ◽  
Molecular Phylogenetic ◽  
Recent Debate ◽  
The Subject

The genus Erythrolamprus Boie (1826) comprises six species of Central and South American false coral snakes (Peters & Orejas-Miranda 1970; Zaher 1999; Curcio et al. 2009). It is traditionally allocated in the tribe Xenodontini (subfamily Xenodontinae), along with the genera Liophis, Lystrophis, Umbrivaga, Waglerophis and Xenodon (sensu Dixon 1980; Cadle 1984; Myers 1986; Ferrarezzi 1994; Zaher 1999). Although Xenodontini is supported by morphological and molecular evidence, phylogenetic relationships and classification within the tribe have been the subject of recent debate. Molecular phylogenetic studies have recovered clades with Erythrolamprus nested within some representatives of the genus Liophis (Vidal et al. 2000; Zaher et al. 2009), partly corroborating previous hypotheses based on morphology (e.g. Dixon 1980).

Phylogenetic relationships of extant echinoderm classes

2001 ◽  
Vol 79 (7) ◽  
pp. 1232-1250 ◽  
Author(s):  
Daniel Janies
Keyword(s):  
Phylogenetic Relationships ◽  
Sea Urchins ◽  
Strong Support ◽  
Sensitivity Analyses ◽  
Molecular Evidence ◽  
Evolutionary Models ◽  
Sea Cucumbers ◽  
Computational Approaches ◽  
Evidential Value ◽  
Nuclear Loci

A well-supported phylogeny of echinoderm classes has eluded morphological, embryological, molecular, and combined analyses. From this body of work it is apparent that (i) echinoids (sea urchins) and holothuroids (sea cucumbers) are related, and (ii) crinoids (sea lilies) are the sister taxon to extant eleutherozoan classes (asteroids, ophiuroids, echinoids, and holothuroids). However, the relationships of asteroids and ophiuroids to other echinoderm classes have been difficult to recover. To address relationships between the asteroids and ophiuroids and other echinoderms, I have sequenced additional nuclear loci and taxa and used novel computational approaches for co-optimizing morphological with molecular evidence at the level of sequence alignment. Support for the monophyly of each class is strong. Support for a monophyletic Asteroidea + Xyloplax is as strong as for Asteroidea. Support for Asterozoa (Asteroidea + Ophiuroidea) is apparent, albeit not as strong as for other clades (e.g., Echinozoa, Eleutherozoa, and Echinodermata). I also present detailed sensitivity analyses to provide (i) a test of the monophyly of groups under a variety of evolutionary models and (ii) a statement of the evidential value of various character systems.

Morphological and molecular evidence for a new species of Russula (Russulaceae) from southern China

Phytotaxa ◽  
2015 ◽  
Vol 202 (2) ◽  
pp. 94 ◽  
Author(s):  
Yang Kun Li ◽  
Xin Zhang ◽  
Ye Yuan ◽  
Zheng Cao ◽  
Jun Feng Liang
Keyword(s):  
New Species ◽  
Related Species ◽  
Phylogenetic Relationships ◽  
Internal Transcribed Spacer ◽  
Southern China ◽  
Its Region ◽  
Molecular Evidence ◽  
Closely Related Species ◽  
A New Species

Russula subrutilans sp. nov., a new species of Russula is described from southern China. It is unique for having buff pink to light congo-pink pileus, distant ventricose to subventricose lamellae with rare lamellulae, globose to broadly ellipsoid spores with bluntly conical warts forming a partial reticulum, and narrowly clavate to clavate cheilocystidia and pleurocysitidia with variable tips. Phylogenetic relationships among the new species and other closely related species in the genus are inferred based on the internal transcribed spacer (ITS) region.

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