scholarly journals Genome-wide association study of Arabidopsis thaliana leaf microbial community

2014 ◽  
Vol 5 (1) ◽  
Author(s):  
Matthew W. Horton ◽  
Natacha Bodenhausen ◽  
Kathleen Beilsmith ◽  
Dazhe Meng ◽  
Brian D. Muegge ◽  
...  
Nature ◽  
2010 ◽  
Vol 465 (7298) ◽  
pp. 627-631 ◽  
Author(s):  
Susanna Atwell ◽  
Yu S. Huang ◽  
Bjarni J. Vilhjálmsson ◽  
Glenda Willems ◽  
Matthew Horton ◽  
...  

2017 ◽  
Author(s):  
Envel Kerdaffrec ◽  
Magnus Nordborg

AbstractSeed dormancy is a complex adaptive trait that controls the timing of seed germination, one of the major fitness components in many plant species. Despite being highly heritable, seed dormancy is extremely plastic and influenced by a wide range of environmental cues. Here, using a set of 92 Arabidopsis thaliana lines from Sweden, we investigate the effect of seed maturation temperature on dormancy variation at the population level. The response to temperature differs dramatically between lines, demonstrating that genotype and the maternal environment interact in controlling the trait. By performing a genome-wide association study (GWAS), we identified several candidate genes that could account for this plasticity, two of which are involved in the photoinduction of germination. Altogether, our results provide insight into both the molecular mechanisms and the evolution of dormancy plasticity, and can serve to improve our understanding of environmentally dependent life-history transitions.HighlightThe effect of low seed-maturation temperatures on seed dormancy is highly variable in Arabidopsis thaliana accessions from Sweden, denoting strong genotype-environment interactions, and a genome-wide association study identified compelling candidates that could account for this plasticity.


2018 ◽  
Vol 221 (4) ◽  
pp. 2026-2038 ◽  
Author(s):  
Bernadette Rubio ◽  
Patrick Cosson ◽  
Mélodie Caballero ◽  
Frédéric Revers ◽  
Joy Bergelson ◽  
...  

2020 ◽  
Author(s):  
Rhonda C. Meyer ◽  
Kathleen Weigelt-Fischer ◽  
Dominic Knoch ◽  
Marc Heuermann ◽  
Yusheng Zhao ◽  
...  

ABSTRACTWe assessed early vegetative growth in a population of 382 accessions of Arabidopsis thaliana using automated non-invasive high-throughput phenotyping. All accessions were imaged daily from seven to 18 days after sowing in three independent experiments and genotyped using the Affymetrix 250k SNP array. Projected leaf area (PLA) was derived from image analysis and used to calculate relative growth rates (RGR). In addition, initial seed size was determined. The generated data sets were used jointly for a genome-wide association study that identified 238 marker-trait associations (MTAs) individually explaining up to 8 % of the total phenotypic variation. Co-localisation of MTAs occurred at 33 genomic positions. At 21 of these positions, sequential co-localisation of MTAs for two to nine consecutive days was observed. The detected MTAs for PLA and RGR could be grouped according to their temporal expression patterns, emphasising that temporal variation of MTA action can be observed even during the vegetative growth phase, a period of continuous formation and enlargement of seemingly similar rosette leaves. This indicates that causal genes may be differentially expressed in successive periods. Analyses of the temporal dynamics of biological processes are needed to gain important insight into the molecular mechanisms of growth-controlling processes in plants.HighlightA genome-wide association study including the factor time highlighted that early plant growth in Arabidopsis is governed by several medium and many small effect loci, most of which act only during short phases of two to nine days.


Sign in / Sign up

Export Citation Format

Share Document