scholarly journals Small sinking particles control anammox rates in the Peruvian oxygen minimum zone

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Clarissa Karthäuser ◽  
Soeren Ahmerkamp ◽  
Hannah K. Marchant ◽  
Laura A. Bristow ◽  
Helena Hauss ◽  
...  

AbstractAnaerobic oxidation of ammonium (anammox) in oxygen minimum zones (OMZs) is a major pathway of oceanic nitrogen loss. Ammonium released from sinking particles has been suggested to fuel this process. During cruises to the Peruvian OMZ in April–June 2017 we found that anammox rates are strongly correlated with the volume of small particles (128–512 µm), even though anammox bacteria were not directly associated with particles. This suggests that the relationship between anammox rates and particles is related to the ammonium released from particles by remineralization. To investigate this, ammonium release from particles was modelled and theoretical encounters of free-living anammox bacteria with ammonium in the particle boundary layer were calculated. These results indicated that small sinking particles could be responsible for ~75% of ammonium release in anoxic waters and that free-living anammox bacteria frequently encounter ammonium in the vicinity of smaller particles. This indicates a so far underestimated role of abundant, slow-sinking small particles in controlling oceanic nutrient budgets, and furthermore implies that observations of the volume of small particles could be used to estimate N-loss across large areas.

2016 ◽  
Vol 113 (38) ◽  
pp. 10601-10606 ◽  
Author(s):  
Laura A. Bristow ◽  
Tage Dalsgaard ◽  
Laura Tiano ◽  
Daniel B. Mills ◽  
Anthony D. Bertagnolli ◽  
...  

A major percentage of fixed nitrogen (N) loss in the oceans occurs within nitrite-rich oxygen minimum zones (OMZs) via denitrification and anammox. It remains unclear to what extent ammonium and nitrite oxidation co-occur, either supplying or competing for substrates involved in nitrogen loss in the OMZ core. Assessment of the oxygen (O2) sensitivity of these processes down to the O2concentrations present in the OMZ core (<10 nmol⋅L−1) is therefore essential for understanding and modeling nitrogen loss in OMZs. We determined rates of ammonium and nitrite oxidation in the seasonal OMZ off Concepcion, Chile at manipulated O2levels between 5 nmol⋅L−1and 20 μmol⋅L−1. Rates of both processes were detectable in the low nanomolar range (5–33 nmol⋅L−1O2), but demonstrated a strong dependence on O2concentrations with apparent half-saturation constants (Kms) of 333 ± 130 nmol⋅L−1O2for ammonium oxidation and 778 ± 168 nmol⋅L−1O2for nitrite oxidation assuming one-component Michaelis–Menten kinetics. Nitrite oxidation rates, however, were better described with a two-component Michaelis–Menten model, indicating a high-affinity component with aKmof just a few nanomolar. As the communities of ammonium and nitrite oxidizers were similar to other OMZs, these kinetics should apply across OMZ systems. The high O2affinities imply that ammonium and nitrite oxidation can occur within the OMZ core whenever O2is supplied, for example, by episodic intrusions. These processes therefore compete with anammox and denitrification for ammonium and nitrite, thereby exerting an important control over nitrogen loss.


2021 ◽  
Vol 1 (1) ◽  
Author(s):  
Xin Sun ◽  
Bess B. Ward

AbstractOxygen minimum zones (OMZs) are unique marine regions where broad redox gradients stimulate biogeochemical cycles. Despite the important and unique role of OMZ microbes in these cycles, they are less characterized than microbes from the oxic ocean. Here we recovered 39 high- and medium-quality metagenome-assembled genomes (MAGs) from the Eastern Tropical South Pacific OMZ. More than half of these MAGs were not represented at the species level among 2631 MAGs from global marine datasets. OMZ MAGs were dominated by denitrifiers catalyzing nitrogen loss and especially MAGs with partial denitrification metabolism. A novel bacterial genome with nitrate-reducing potential could only be assigned to the phylum level. A Marine-Group II archaeon was found to be a versatile denitrifier, with the potential capability to respire multiple nitrogen compounds including N2O. The newly discovered denitrifying MAGs will improve our understanding of microbial adaptation strategies and the evolution of denitrification in the tree of life.


2021 ◽  
Author(s):  
Xin Sun ◽  
Claudia Frey ◽  
Emilio Garcia-Robledo ◽  
Amal Jayakumar ◽  
Bess B. Ward

AbstractNitrite is a pivotal component of the marine nitrogen cycle. The fate of nitrite determines the loss or retention of fixed nitrogen, an essential nutrient for all organisms. Loss occurs via anaerobic nitrite reduction to gases during denitrification and anammox, while retention occurs via nitrite oxidation to nitrate. Nitrite oxidation is usually represented in biogeochemical models by one kinetic parameter and one oxygen threshold, below which nitrite oxidation is set to zero. Here we find that the responses of nitrite oxidation to nitrite and oxygen concentrations vary along a redox gradient in a Pacific Ocean oxygen minimum zone, indicating niche differentiation of nitrite-oxidizing assemblages. Notably, we observe the full inhibition of nitrite oxidation by oxygen addition and nitrite oxidation coupled with nitrogen loss in the absence of oxygen consumption in samples collected from anoxic waters. Nitrite-oxidizing bacteria, including novel clades with high relative abundance in anoxic depths, were also detected in the same samples. Mechanisms corresponding to niche differentiation of nitrite-oxidizing bacteria across the redox gradient are considered. Implementing these mechanisms in biogeochemical models has a significant effect on the estimated fixed nitrogen budget.


2010 ◽  
Vol 57 (3) ◽  
pp. 384-393 ◽  
Author(s):  
Silvia E. Bulow ◽  
Jeremy J. Rich ◽  
Hema S. Naik ◽  
Anil K. Pratihary ◽  
Bess B. Ward

2013 ◽  
Vol 16 (10) ◽  
pp. 3041-3054 ◽  
Author(s):  
Loreto De Brabandere ◽  
Don E. Canfield ◽  
Tage Dalsgaard ◽  
Gernot E. Friederich ◽  
Niels Peter Revsbech ◽  
...  

2018 ◽  
Author(s):  
Marine Bretagnon ◽  
Aurélien Paulmier ◽  
Véronique Garçon ◽  
Boris Dewitte ◽  
Sérena Illig ◽  
...  

Abstract. The fate of the Organic Matter (OM) produced by marine life controls the major biogeochemical cycles of the Earth’s system. The OM produced through photosynthesis is either preserved, exported towards sediments or degraded through remineralisation in the water column. The productive Eastern Boundary Upwelling Systems (EBUSs) associated with Oxygen Minimum Zones (OMZs) should foster OM preservation due to low O2 conditions, but their intense and diverse microbial activity should enhance OM degradation. To investigate this contradiction, sediment traps were deployed near the oxycline and in the OMZ core on an instrumented moored line off Peru, providing high temporal resolution O2 series characterizing two seasonal steady states at the upper trap: suboxic ([O2] 


2020 ◽  
Author(s):  
M. Consuelo Gazitúa ◽  
Dean R. Vik ◽  
Simon Roux ◽  
Ann C. Gregory ◽  
Benjamin Bolduc ◽  
...  

AbstractViruses play an important role in the ecology and biogeochemistry of marine ecosystems. Beyond mortality and gene transfer, viruses can reprogram microbial metabolism during infection by expressing auxiliary metabolic genes (AMGs) involved in photosynthesis, central carbon metabolism, and nutrient cycling. While previous studies have focused on AMG diversity in the sunlit and dark ocean, less is known about the role of viruses in shaping metabolic networks along redox gradients associated with marine oxygen minimum zones (OMZs). Here, we analyzed relatively quantitative viral metagenomic datasets that profiled the oxygen gradient across Eastern Tropical South Pacific (ETSP) OMZ waters, assessing whether OMZ viruses might impact nitrogen (N) cycling via AMGs. Identified viral genomes encoded six N-cycle AMGs associated with denitrification, nitrification, assimilatory nitrate reduction, and nitrite transport. The majority of these AMGs (80%) were identified in T4-like Myoviridae phages, predicted to infect Cyanobacteria and Proteobacteria, or in unclassified archaeal viruses predicted to infect Thaumarchaeota. Four AMGs were exclusive to anoxic waters and had distributions that paralleled homologous microbial genes. Together, these findings suggest viruses modulate N-cycling processes within the ETSP OMZ and may contribute to nitrogen loss throughout the global oceans thus providing a baseline for their inclusion in the ecosystem and geochemical models.


2018 ◽  
Author(s):  
Insa Rapp ◽  
Christian Schlosser ◽  
Jan-Lukas Menzel Barraqueta ◽  
Bernhard Wenzel ◽  
Jan Lüdke ◽  
...  

Abstract. The availability of the micronutrient iron (Fe) in surface waters determines primary production, N2 fixation and microbial community structure in large parts of the world's ocean, and thus plays an important role in ocean carbon and nitrogen cycles. Eastern boundary upwelling systems and the connected oxygen minimum zones (OMZs) are typically associated with elevated concentrations of redox-sensitive trace metals (e.g. Fe, manganese (Mn) and cobalt (Co)), with shelf sediments typically forming a key source. Over the last five decades, an expansion and intensification of OMZs has been observed and this trend is likely to proceed. However, it is unclear how trace metal (TM) distributions and transport are influenced by decreasing oxygen (O2) concentrations. Here we present dissolved (d;  0.2 μm) TM data collected at 7 stations along a 50 km transect in the Mauritanian shelf region. We observed enhanced concentrations of Fe, Co and Mn corresponding with low O2 concentrations (


2013 ◽  
Vol 10 (6) ◽  
pp. 9451-9492 ◽  
Author(s):  
L. A. Levin ◽  
A. L. McGregor ◽  
G. F. Mendoza ◽  
C. Woulds ◽  
P. Cross ◽  
...  

Abstract. There is a growing need to understand the ability of bathyal assemblages to recover from disturbance and oxygen stress, as human activities and expanding oxygen minimum zones increasingly affect deep continental margins. The effects of a pronounced oxygen minimum zone (OMZ) on slope benthic community structure have been studied in both the Western and Eastern Arabian Sea; however, little is known about the dynamics or resilience of these benthic populations. To examine the influence of oxygen and phytodetritus on short-term settlement patterns we conducted colonization experiments along two cross-OMZ transects on the West Indian continental margin. Four colonization trays were deployed at each depth for 4 days at 542 and 802 m (16°58′ N) and for 9 days at 817 m and 1147 m (17°31′ N). Oxygen concentrations ranged from 0.9 μM (0.02 mL L−1) at 542 m to 22 μM (0.5 mL L−1) at 1147 m. All trays contained local defaunated sediments; half of the trays at each depth also contained 13C/15N-labeled phytodetritus mixed into the sediments. Sediment cores were collected between 535 m and 1140 m for analysis of background (source) macrofaunal (> 300 μm) densities and composition. Background densities ranged from 0 ind. m−2 (at 535–542 m) to 7400 ind. m−2, with maximum values on both transects at 700–800 m. Macrofaunal colonizer densities ranged from 0 ind. m−2 at 542 m, where oxygen was lowest, to average values of 142 ind. m−2 at 800 m, and 3074 ind. m−2 at 1147 m, where oxygen concentration was highest. These were equal to 4.3% and 151% of the ambient background community at 800 m and 1147 m, respectively. Community structure of settlers showed no response to the presence of phytodetritus. Increasing depth and oxygen concentration, however, significantly influenced the community composition and abundance of colonizing macrofauna. Polychaetes constituted 92.4% of the total colonizers, followed by crustaceans (4.2%), mollusks (2.5%), and echinoderms (0.8%). The majority of colonizers were found at 1147m; 88.5% of these were Capitella sp., although they were rare in the background community. Colonists at 800 and 1147 m also included ampharetid, spionid, syllid, lumbrinerid, cirratulid, cossurid and sabellid polychaetes. Consumption of δ13C/ δ15N-labeled phytodetritus was observed for macrofaunal foraminifera (too large to be colonizers) at the 542 and 802/817 m sites, and by metazoan macrofauna mainly at the deepest, better oxygenated site. Calcareous foraminifera (Uvigerina, Hoeglundina sp.), capitellid polychaetes and cumaceans were among the major consumers. These preliminary experiments suggest that bottom-water oxygen concentrations may strongly influence ecosystem services on continental margins, as reflected in rates of colonization by benthos and colonizer processing of carbon following disturbance.


PLoS ONE ◽  
2017 ◽  
Vol 12 (1) ◽  
pp. e0170059 ◽  
Author(s):  
Cameron M. Callbeck ◽  
Gaute Lavik ◽  
Lothar Stramma ◽  
Marcel M. M. Kuypers ◽  
Laura A. Bristow

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