Total Water Column Analysis Shows the Importance of a Single Species in Subsurface Chlorophyll Maximum Thin Layers in Stratified Waters

Marine phytoplankton form the base of marine food webs and are the driving force of the marine carbon cycle, so understanding the dynamics of their blooms is critical. While near-surface marine productivity (<10 m water depths) is extensively documented, that of the subsurface is less well characterised. Increasing evidence of the importance of subsurface chlorophyll maxima (SCM) and climatically driven increases in stratification of surface waters that promote SCM development call for improved sampling of the subsurface. To address this, we targeted the summer stratified waters of the Western English Channel, part of the NW European shelf seas, where SCM are commonly developed. In situ holography was applied to undertake the highest ever resolution, total water column, quantitative analysis of microplankton distribution, and demonstrated the importance of a SCM, co-located with the thermocline, dominated by a single species, the dinoflagellate Ceratium fusus. This species was dominant in the SCM over a wide area of the NW European shelf in the June/July 2015 study period and comprised up to 85% of the SCM biomass. Analysis of similarity and multivariate non-metric multidimensional scaling showed the phytoplankton community of the SCM to be statistically distinct from those of the surface and deep waters. Holography also revealed a fine scale layering of taxa at different levels within the SCM, likely reflecting ecological differences. Some taxa followed the peak abundance of C. fusus, while others reached maximum abundances immediately below or above the C. fusus maximum, suggesting the possible operation of exclusion mechanisms. Additionally, the detection of abundant aggregates located only within and beneath the SCM demonstrates the potential importance of this deep production for the export of carbon to the sea floor. Some predictions of phytoplankton productivity propose a shift to smaller cells in the more stratified oceans of the future resulting in declining production and export. Results presented here, however, contribute to a growing body of evidence that suggests, on the contrary, that key species among the larger celled/colonial, SCM-adapted diatoms and dinoflagellates may instead be selected in stratified conditions, driving increased production and export.

Lipids of Marine Algae—Biomolecules with High Nutritional Value and Important Bioactive Properties

Marine microalgae are a multitude of taxonomically diverse unicellular organisms, ranging from diatoms to dinoflagellates and several other well-known groups, that may dwell in the water column, occur in marine sediments, or even associate symbiotically with marine animals.

Bacteriohopanetetrol-<i>x</i>: constraining its application as a lipid biomarker for marine anammox using the water column oxygen gradient of the Benguela upwelling system

Interpreting lipid biomarkers in the sediment archive requires a good understanding of their application and limitations in modern systems. Recently it was discovered that marine bacteria performing anaerobic ammonium oxidation (anammox), belonging to the genus Ca. Scalindua, uniquely synthesize a stereoisomer of bacteriohopanetetrol (“BHT-x”). The ratio of BHT-x over total bacteriohopanetetrol (BHT, ubiquitously synthesized by diverse bacteria) has been suggested as a proxy for water column anoxia. As BHT has been found in sediments over 50 Myr old, BHT-x has the potential to complement and extend the sedimentary biomarker record of marine anammox, conventionally constructed using ladderane lipids. Yet, little is known about the distribution of BHT-x in relation to the distribution of ladderanes and to the genetic evidence of Ca. Scalindua in modern marine systems. Here, we investigate the distribution of BHT-x and the application of the BHT-x ratio in relation to distributions of ladderane intact polar lipids (IPLs), ladderane fatty acids (FAs) and Ca. Scalindua 16S rRNA genes in suspended particulate matter (SPM) from the water column of the Benguela upwelling system (BUS), sampled across a large oxygen gradient. In BUS SPM, high BHT-x abundances were restricted to the oxygen-deficient zone on the continental shelf (at [O2] < 45 µmol L−1, in all but one case). High BHT-x abundances co-occurred with high abundances of the Ca. Scalindua 16S rRNA gene (relative to the total number of bacterial 16S rRNA genes) and ladderane IPLs. At shelf stations with [O2] > 50 µmol L−1, the BHT-x ratio was < 0.04 (in all but one case). In apparent contradiction, ladderane FAs and low abundances of BHT and BHT-x (resulting in BHT-x ratios > 0.04) were also detected in oxygenated offshore waters ([O2] up to 180 µmol L−1), whereas ladderane IPLs were undetected. The index of ladderane lipids with five cyclobutane rings (NL5) correlates with in situ temperature. NL5-derived temperatures suggested that ladderane FAs in the offshore waters were not synthesized in situ but were transported down-slope from warmer shelf waters. Thus, in sedimentary archives of systems with known lateral organic matter transport, such as the BUS, relative BHT and BHT-x abundances should be carefully considered. In such systems, a higher BHT-x ratio may act as a safer threshold for deoxygenation and/or Ca. Scalindua presence: our results and previous studies indicate that a BHT-x ratio of ≥ 0.2 is a robust threshold for oxygen-depleted waters ([O2] < 50 µmol kg−1). In our data, ratios of ≥ 0.2 coincided with Ca. Scalindua 16S rRNA genes in all samples (n=62), except one. Lastly, when investigating in situ anammox, we highlight the importance of using ladderane IPLs over BHT-x and/or ladderane FAs; these latter compounds are more recalcitrant and may derive from transported fossil anammox bacteria remnants.

Significant Temporal and Spatial Variability in Nutrient Concentrations in a Chinese Eutrophic Shallow Lake and Its Major Tributaries

Sediment nutrients can be released to the surface water when hydraulic disturbance becomes strong in shallow lakes, which contributes to nutrient enrichment and subsequent lake eutrophication in the water column. To explore the seasonal variations and spatial distributions exhibited by nutrients in the water column, surface sediment, and pore water of Lake Yangcheng and its major tributaries, we determined the concentrations of nitrogen (N) and phosphorus (P) throughout the lake in different seasons of 2018. Total N (TN) and total P (TP) concentrations in the connected rivers were much greater than those in the lake, indicating that external loading greatly contributed to the nutrient enrichment. TN concentration in the water column was highest in the winter, whereas TP peaked in the summer. A similar temporal pattern was observed for TN and TP in the sediment with maxima in the winter and minima in the summer; however, nutrients in the pore water were highest in the summer, in contrast to the temporal variation in the sediment. Additionally, high TN values in the water column and high TP in the three compartments were distributed primarily in the west part of the lake, while high TN concentrations in the sediment and pore water were observed mainly in the east portion of the lake. According to the enrichment factor index (an indicator evaluating the nutrient enrichment by comparing the detected contents and standard values), nutrients in the lake sediment were severely enriched with TN and TP averaging 2195.8 mg/kg and 543.0 mg/kg, respectively. The vertical distribution of TN and TP generally exhibited similar decreasing patterns with an increase in sediment depth, suggesting mineralization of TN and TP by microbes and benthic organisms. More attention and research are needed to understand the seasonality of nutrient exchange across the sediment–water interface, especially in eutrophic lakes.

The role of methanotrophy in the microbial carbon metabolism of temperate lakes

Previous stable isotope and biomarker evidence has indicated that methanotrophy is an important pathway in the microbial loop of freshwater ecosystems, despite the low cell abundance of methane-oxidizing bacteria (MOB) and the low methane concentrations relative to the more abundant dissolved organic carbon (DOC). However, quantitative estimations of the relative contribution of methanotrophy to the microbial carbon metabolism of lakes are scarce, and the mechanism allowing methanotrophy to be of comparable importance to DOC-consuming heterotrophy remained elusive. Using incubation experiments, microscopy, and multiple water column profiles in six temperate lakes, we show that MOB play a much larger role than their abundances alone suggest because of their larger cell size and higher specific activity. MOB activity is tightly constrained by the local methane:oxygen ratio, with DOC-rich lakes with large hypolimnetic volume fraction showing a higher carbon consumption through methanotrophy than heterotrophy at the whole water column level. Our findings suggest that methanotrophy could be a critical microbial carbon consumption pathway in many temperate lakes, challenging the prevailing view of a DOC-centric microbial metabolism in these ecosystems.

Biogeochemical Niche of Magnetotactic Cocci Capable of Sequestering Large Polyphosphate Inclusions in the Anoxic Layer of the Lake Pavin Water Column

Magnetotactic bacteria (MTB) are microorganisms thriving mostly at oxic–anoxic boundaries of aquatic habitats. MTB are efficient in biomineralising or sequestering diverse elements intracellularly, which makes them potentially important actors in biogeochemical cycles. Lake Pavin is a unique aqueous system populated by a wide diversity of MTB with two communities harbouring the capability to sequester not only iron under the form of magnetosomes but also phosphorus and magnesium under the form of polyphosphates, or calcium carbonates, respectively. MTB thrive in the water column of Lake Pavin over a few metres along strong redox and chemical gradients representing a series of different microenvironments. In this study, we investigate the relative abundance and the vertical stratification of the diverse populations of MTB in relation to environmental parameters, by using a new method coupling a precise sampling for geochemical analyses, MTB morphotype description, and in situ measurement of the physicochemical parameters. We assess the ultrastructure of MTB as a function of depth using light and electron microscopy. We evidence the biogeochemical niche of magnetotactic cocci, capable of sequestering large PolyP inclusions below the oxic–anoxic transition zone. Our results suggest a tight link between the S and P metabolisms of these bacteria and pave the way to better understand the implication of MTB for the P cycle in stratified environmental conditions.

Comparative study of offshore spar-buoy oscillating water column dynamic models for captured power estimation

The prompt estimation of power and geometrical aspects enables faster and more accurate financial assessment of wave energy converters to be deployed. This may lead to better commercialisation of wave energy technologies, as they require location-based customisation, unlike the mature wind energy technologies with developed benchmark. The adopted approach provides simple and efficient modelling tool allowing the study of the system from different perspective. The aim of this study is to select the optimum dynamic model to predict the captured power of a spar-buoy Oscillating Water Column (OWC) wave energy converter. Four dynamic models were developed to predict the system dynamics and results were validated experimentally. In-depth investigations on the effect of the mass and damping ratios of the oscillating bodies on the accuracy of the adopted models were performed. Such investigations included the proposed one-way coupling model and three two-degree of freedom models and three reduced-scale models, in addition to analytical and numerical solutions. Pneumatic power was calculated for the reduced-scale model where orifices’ covers simulated the power take-off mechanism damping experimentally. Analysis and comparisons between the adopted models are finally provided.

Development of a Computational Model for Investigation of and Oscillating Water Column Device with a Savonius Turbine

The present work aims to develop a computational model investigating turbulent flows in a problem that simulates an oscillating water column device (OWC) considering a Savonius turbine in the air duct region. Incompressible, two-dimensional, unsteady, and turbulent flows were considered for three different configurations: (1) free turbine inserted in a long and large channel for verification/validation of the model, (2) an enclosure domain that mimics an OWC device with a constant velocity at its inlet, and (3) the same domain as that in Case 2 with sinusoidal velocity imposed at the inlet. A dynamic rotational mesh in the turbine region was imposed. Time-averaged equations of the conservation of mass and balance of momentum with the k–ω Shear Stress Transport (SST) model for turbulence closure were solved with the finite volume method. The developed model led to promising results, predicting similar time–spatial-averaged power coefficients (CP¯) as those obtained in the literature for different magnitudes of the tip speed ratio (0.75 ≤ λ ≤ 2.00). The simulation of the enclosure domain increased CP¯ for all studied values of λ in comparison with a free turbine (Case 1). The imposition of sinusoidal velocity (Case 3) led to a similar performance as that obtained for constant velocity (Case 2).

Overview on Oscillating Water Column Devices

Oscillating-water-column (OWC) converters, of fixed structure or floating, are an important class of wave energy devices. A large part of wave energy converter prototypes deployed so far into the sea are of OWC type. The paper presents a review of recent advances in OWC technology, including sea-tested prototypes and plants, new concepts, air turbines, model testing techniques and control.