scholarly journals Phylogeography of the sand dollar genus Encope: implications regarding the Central American Isthmus and rates of molecular evolution

2017 ◽  
Vol 7 (1) ◽  
Author(s):  
Simon E. Coppard ◽  
H. A. Lessios
1988 ◽  
Vol 62 (01) ◽  
pp. 126-132 ◽  
Author(s):  
Douglas S. Jones ◽  
Roger W. Portell

Whole body asteroid fossils are rare in the geologic record and previously unreported from the Cenozoic of Florida. However, specimens of the extant species,Heliaster microbrachiusXantus, were recently discovered in upper Pliocene deposits. This marks the first reported fossil occurrence of the monogeneric Heliasteridae, a group today confined to the eastern Pacific. This discovery provides further non-molluscan evidence of the close similarities between the Neogene marine fauna of Florida and the modern fauna of the eastern Pacific. The extinction of the heliasters in the western Atlantic is consistent with the pattern of many other marine groups in the region which suffered impoverishment following uplift of the Central American isthmus.


Genetics ◽  
2000 ◽  
Vol 154 (3) ◽  
pp. 1403-1417 ◽  
Author(s):  
David J Cutler

Abstract Rates of molecular evolution at some protein-encoding loci are more irregular than expected under a simple neutral model of molecular evolution. This pattern of excessive irregularity in protein substitutions is often called the “overdispersed molecular clock” and is characterized by an index of dispersion, R(T) > 1. Assuming infinite sites, no recombination model of the gene R(T) is given for a general stationary model of molecular evolution. R(T) is shown to be affected by only three things: fluctuations that occur on a very slow time scale, advantageous or deleterious mutations, and interactions between mutations. In the absence of interactions, advantageous mutations are shown to lower R(T); deleterious mutations are shown to raise it. Previously described models for the overdispersed molecular clock are analyzed in terms of this work as are a few very simple new models. A model of deleterious mutations is shown to be sufficient to explain the observed values of R(T). Our current best estimates of R(T) suggest that either most mutations are deleterious or some key population parameter changes on a very slow time scale. No other interpretations seem plausible. Finally, a comment is made on how R(T) might be used to distinguish selective sweeps from background selection.


2017 ◽  
Vol 17 (1) ◽  
Author(s):  
Peng-Fei Ma ◽  
Maria S. Vorontsova ◽  
Olinirina Prisca Nanjarisoa ◽  
Jacqueline Razanatsoa ◽  
Zhen-Hua Guo ◽  
...  

Author(s):  
Nahid Shokri Bousjein ◽  
Simon Tierney ◽  
Michael Gardner ◽  
Michael Schwarz

Adaptive evolutionary theory argues that organisms with larger effective population size (Ne) should have higher rates of adaptive evolution and therefore greater capacity to win evolutionary arm races. However, in some certain cases species with much smaller Ne may be able to survive beside their opponents for an extensive evolutionary time. Neutral theory predicts that accelerated rates of molecular evolution in organisms with exceedingly small Ne is due to the effects of genetic drift and fixation of slightly deleterious mutations. We test this prediction in two obligate social parasite species and their respective host species from the bee tribe Allodapini. The parasites (genus Inquilina) have been locked into a tight coevolutionary arm races with their exclusive hosts (genus Exoneura) for ~15 million years, even though Inquilina exhibit Ne that are an order of magnitude smaller than their host. In this study, we compared rates of molecular evolution between host and parasite using nonsynonymous to synonymous substitution rate ratios (dN/dS) of eleven mitochondrial protein coding genes sequenced from transcriptomes. Tests of selection on mitochondrial genes indicated no significant differences between host and parasite dN/dS, with evidence for purifying selection acting on all mitochondrial genes of host and parasite species. Several potential factors which could weaken the inverse relationship between Ne and rate of molecular evolution are discussed.


2011 ◽  
Vol 278 (1710) ◽  
pp. 1294-1297 ◽  
Author(s):  
Len N. Gillman ◽  
Paul McBride ◽  
D. Jeanette Keeling ◽  
Howard A. Ross ◽  
Shane D. Wright

2014 ◽  
Vol 11 (1) ◽  
Author(s):  
María Fernanda Castillo-Cárdenas ◽  
Fernando Díaz-Gonzales ◽  
Ivania Cerón-Souza ◽  
Oris Sanjur ◽  
Nelson Toro-Perea

1992 ◽  
Vol 6 ◽  
pp. 88-88
Author(s):  
Harry J. Dowsett

The stratigraphic record in Panama and Costa Rica preserves the biologic and climatic changes associated with the formation of a major barrier to marine migration and ocean circulation. Creating a high resolution temporal framework within which stratigraphic sections found on the Isthmus can be interpreted is fundamental to our understanding the history and importance of these units.The Isthmus contains rich marine macro- and microfaunas and floras on both the Pacific and Atlantic margins. Planktic foraminifers and calcareous nannofossils are common and often well preserved. Preliminary analysis of these fossils reveals a rich sedimentary record spanning the Late Miocene to Pleistocene. Multivariate statistical analyses of these assemblages provide environmental estimates. Unfortunately, traditional methods of biostratigraphy are limited in their ability to create a high resolution temporal framework for the region. For example, a majority of deposits analyzed can be placed in planktic foraminiferal zone N19 (early Pliocene). In order to answer paleobiologic and paleoclimatic questions one requires more precise correlations between sections and some indication of duration of sedimentation represented by various sections.In an attempt to overcome the shortcomings of traditional biostratigraphic methods, the Graphic Correlation method has been applied to selected sequences on the Central American Isthmus. Graphic correlation (GC) is a procedure by which two sequences can be compared and correlated using a wide variety of stratigraphic information simultaneously. A GC model of late Neogene planktic foraminifer, calcareous nannofossil, and paleomagnetic reversal events has been produced through compositing of more than 26 deep sea cores and ocean margin sequences. Following routine GC procedures the positions of all fossil first and last occurrences from a number of sections on the Caribbean and Pacific sides of the Central American Isthmus (Panama and Costa Rica) have been recorded. These sections have been correlated to the GC model and hence, to each other, providing a temporal framework for the Isthmus units.Selected sections were then correlated to other sequences such as near-by deep sea cores which have been analyzed for sea surface temperature and salinity to gain a better understanding of the overall paleoceanographic development of the region between 5 and 2 Ma. For example, correlation of units on the Caribbean side of the Isthmus with DSDP Site 502 indicates little to no change in sea surface temperatures during the entire time the Isthmus was reaching closure. Mid-to-high latitude sites exhibit amplification of warming with increasing latitude. The shoaling Isthmus, while having negligible effects on tropical marine temperatures, was responsible for increased meridional heat transport which resulted in a North Atlantic warming about 3 Ma. A general model for paleoceanographic changes during the time of closure will be discussed.


1992 ◽  
Vol 6 ◽  
pp. 68-68
Author(s):  
Timothy Collins

The marine vicariant event resulting from the Pliocene emergence of the Central American Isthmus presents a unique opportunity for calibrating rates of molecular evolution. The synchronous fragmentation of the ranges of previously widespread taxa into Western Atlantic and Eastern Pacific components (geminates) enables one to make comparisons of rates among higher taxa on the same time scale and to evaluate the regularity of rates of molecular evolution among all species sampled. Other advantages of this approach are that the time scale (approximately 3 Ma) is one of particular interest for evolutionary biologists concerned with speciation and one that minimizes the ambiguities associated with augmentation of divergence values to account for multiple hits at a site. The divergence values derived for geminate pairs are independent, allowing statistical evaluation of variance in rates.The current popularity of the relative rates test as the final arbiter of questions regarding rates and rate variation is primarily a matter of convenience and not a reflection of methodological superiority. A review of the commonly used techniques for calibrating rates of molecular evolution shows that each approach has limitations. Temporally based calibrations of rates are necessary complements to time-independent comparisons.Interpretation of transisthmian molecular comparisons in the literature have in many cases been unduly influenced and confused by molecular clock assumptions and the restriction of studies to single higher-level taxa. Analysis of the apparently contradictory published data as well as new results from sequence comparisons of fishes, urchins and snails suggests a synthesis: taxon specific rates of molecular evolution, with reduced variance within taxonomic groups and great variance among all groups sampled.


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