scholarly journals Increased microbial expression of organic nitrogen cycling genes in long-term warmed grassland soils

2021 ◽  
Vol 1 (1) ◽  
Author(s):  
Joana Séneca ◽  
Andrea Söllinger ◽  
Craig W. Herbold ◽  
Petra Pjevac ◽  
Judith Prommer ◽  
...  

AbstractGlobal warming increases soil temperatures and promotes faster growth and turnover of soil microbial communities. As microbial cell walls contain a high proportion of organic nitrogen, a higher turnover rate of microbes should also be reflected in an accelerated organic nitrogen cycling in soil. We used a metatranscriptomics and metagenomics approach to demonstrate that the relative transcription level of genes encoding enzymes involved in the extracellular depolymerization of high-molecular-weight organic nitrogen was higher in medium-term (8 years) and long-term (>50 years) warmed soils than in ambient soils. This was mainly driven by increased levels of transcripts coding for enzymes involved in the degradation of microbial cell walls and proteins. Additionally, higher transcription levels for chitin, nucleic acid, and peptidoglycan degrading enzymes were found in long-term warmed soils. We conclude that an acceleration in microbial turnover under warming is coupled to higher investments in N acquisition enzymes, particularly those involved in the breakdown and recycling of microbial residues, in comparison with ambient conditions.

2021 ◽  
Vol 773 ◽  
pp. 145640
Author(s):  
Lili Rong ◽  
Longfei Zhao ◽  
Leicheng Zhao ◽  
Zhipeng Cheng ◽  
Yiming Yao ◽  
...  

2021 ◽  
Author(s):  
Alin Song ◽  
Zimin Li ◽  
Fenliang Fan

<p>Returning crop straw into soil is an important practice to balance biogenic and bioavailable silicon (Si) pool in paddy, which is crucial for rice healthy growth. However, it remains elusive how straw return affects Si bioavailability, its uptake, and rice yield, owing to little knowledge about soil microbial communities responsible for straw degradation. Here, we investigated the change of soil Si fractions and microbial community in a 39-year-old paddy field amended by a long-term straw return. Results showed that rice straw-return significantly increased soil bioavailable Si and rice yield to from 29.9% to 61.6% and from 14.5% to 23.6%, respectively, compared to NPK fertilization alone. Straw return significantly altered soil microbial community abundance. Acidobacteria was positively and significantly related to amorphous Si, while Rokubacteria at the phylum level, Deltaproteobacteria and Holophagae at the class level were negatively and significantly related to organic matter adsorbed and Fe/Mn-oxide combined Si in soils. Redundancy analysis of their correlations further demonstrated that Si status significantly explained 12% of soil bacterial community variation. These findings suggest that soil bacteria community and diversity interact with Si mobility via altering its transformation, resulting in the balance of various nutrient sources to drive biological silicon cycle in agroecosystem.</p>


Agronomy ◽  
2017 ◽  
Vol 7 (2) ◽  
pp. 37 ◽  
Author(s):  
Sadikshya Dangi ◽  
Rebecca Tirado-Corbalá ◽  
James Gerik ◽  
Bradley Hanson

2020 ◽  
Vol 38 (1) ◽  
pp. 13-23 ◽  
Author(s):  
Monika Gorzelak ◽  
Breanne M. McAmmond ◽  
Jonathan D. Van Hamme ◽  
Christina Birnbaum ◽  
Corrina Thomsen ◽  
...  

2021 ◽  
Vol 1 (1) ◽  
Author(s):  
Ernest D. Osburn ◽  
Frank O. Aylward ◽  
J. E. Barrett

AbstractLand use change has long-term effects on the structure of soil microbial communities, but the specific community assembly processes underlying these effects have not been identified. To investigate effects of historical land use on microbial community assembly, we sampled soils from several currently forested watersheds representing different historical land management regimes (e.g., undisturbed reference, logged, converted to agriculture). We characterized bacterial and fungal communities using amplicon sequencing and used a null model approach to quantify the relative importance of selection, dispersal, and drift processes on bacterial and fungal community assembly. We found that bacterial communities were structured by both selection and neutral (i.e., dispersal and drift) processes, while fungal communities were structured primarily by neutral processes. For both bacterial and fungal communities, selection was more important in historically disturbed soils compared with adjacent undisturbed sites, while dispersal processes were more important in undisturbed soils. Variation partitioning identified the drivers of selection to be changes in vegetation communities and soil properties (i.e., soil N availability) that occur following forest disturbance. Overall, this study casts new light on the effects of historical land use on soil microbial communities by identifying specific environmental factors that drive changes in community assembly.


2011 ◽  
Vol 52 (No. 8) ◽  
pp. 345-352 ◽  
Author(s):  
G. Mühlbachová ◽  
P. Tlustoš

The effects of liming by CaO and CaCO<sub>3</sub> on soil microbial characteristics were studied during laboratory incubation of long-term contaminated arable and grassland soils from the vicinity of lead smelter near Př&iacute;bram (Czech Republic). The CaO treatment showed significant negative effects on soil microbial biomass C and its respiratory activity in both studied soils, despite the fact that microbial biomass C in the grassland soil increased sharply during the first day of incubation. The metabolic quotient (qCO<sub>2</sub>) in soils amended by CaO showed greater values than the control from the second day of incubation, indicating a possible stress of soil microbial pool. The vulnerability of organic matter to CaO could be indicated by the availability of K<sub>2</sub>SO<sub>4</sub>-extractable carbon that increased sharply, particularly at the beginning of the experiment. The amendment of soils by CaCO<sub>3 </sub>moderately increased the soil microbial biomass. The respiratory activity and qCO<sub>2</sub> increased sharply during the first day of incubation, however it is not possible to ascribe them only to microbial activities, but also to CaCO<sub>3</sub> decomposition in hydrogen carbonates, water and CO<sub>2</sub>. The pH values increased more sharply under CaO treatment in comparison to CaCO<sub>3</sub> treatment. The improvement of soil pH by CaCO<sub>3</sub> could be therefore more convenient for soil microbial communities.


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