Following the structural changes during zinc-induced crystallization of charged membranes using time-resolved solution X-ray scattering

Soft Matter ◽  
2011 ◽  
Vol 7 (4) ◽  
pp. 1512-1523 ◽  
Author(s):  
Moshe Nadler ◽  
Ariel Steiner ◽  
Tom Dvir ◽  
Or Szekely ◽  
Pablo Szekely ◽  
...  
2019 ◽  
Vol 2 (1) ◽  
Author(s):  
Derren J. Heyes ◽  
Samantha J. O. Hardman ◽  
Martin N. Pedersen ◽  
Joyce Woodhouse ◽  
Eugenio De La Mora ◽  
...  

IUCrJ ◽  
2018 ◽  
Vol 5 (6) ◽  
pp. 667-672 ◽  
Author(s):  
Inokentijs Josts ◽  
Stephan Niebling ◽  
Yunyun Gao ◽  
Matteo Levantino ◽  
Henning Tidow ◽  
...  

This work demonstrates a new method for investigating time-resolved structural changes in protein conformation and oligomerization via photocage-initiated time-resolved X-ray solution scattering by observing the ATP-driven dimerization of the MsbA nucleotide-binding domain. Photocaged small molecules allow the observation of single-turnover reactions of non-naturally photoactivatable proteins. The kinetics of the reaction can be derived from changes in X-ray scattering associated with ATP-binding and subsequent dimerization. This method can be expanded to any small-molecule-driven protein reaction with conformational changes traceable by X-ray scattering where the small molecule can be photocaged.


IUCrJ ◽  
2014 ◽  
Vol 1 (6) ◽  
pp. 478-491 ◽  
Author(s):  
Wim Bras ◽  
Satoshi Koizumi ◽  
Nicholas J Terrill

Small- and wide-angle X-ray scattering (SAXS, WAXS) are standard tools in materials research. The simultaneous measurement of SAXS and WAXS data in time-resolved studies has gained popularity due to the complementary information obtained. Furthermore, the combination of these data with non X-ray based techniques,viaeither simultaneous or independent measurements, has advanced understanding of the driving forces that lead to the structures and morphologies of materials, which in turn give rise to their properties. The simultaneous measurement of different data regimes and types, using either X-rays or neutrons, and the desire to control parameters that initiate and control structural changes have led to greater demands on sample environments. Examples of developments in technique combinations and sample environment design are discussed, together with a brief speculation about promising future developments.


2018 ◽  
Vol 25 (2) ◽  
pp. 306-315 ◽  
Author(s):  
Elisa Biasin ◽  
Tim B. van Driel ◽  
Gianluca Levi ◽  
Mads G. Laursen ◽  
Asmus O. Dohn ◽  
...  

Time-resolved X-ray scattering patterns from photoexcited molecules in solution are in many cases anisotropic at the ultrafast time scales accessible at X-ray free-electron lasers (XFELs). This anisotropy arises from the interaction of a linearly polarized UV–Vis pump laser pulse with the sample, which induces anisotropic structural changes that can be captured by femtosecond X-ray pulses. In this work, a method for quantitative analysis of the anisotropic scattering signal arising from an ensemble of molecules is described, and it is demonstrated how its use can enhance the structural sensitivity of the time-resolved X-ray scattering experiment. This method is applied on time-resolved X-ray scattering patterns measured upon photoexcitation of a solvated di-platinum complex at an XFEL, and the key parameters involved are explored. It is shown that a combined analysis of the anisotropic and isotropic difference scattering signals in this experiment allows a more precise determination of the main photoinduced structural change in the solute,i.e.the change in Pt—Pt bond length, and yields more information on the excitation channels than the analysis of the isotropic scattering only. Finally, it is discussed how the anisotropic transient response of the solvent can enable the determination of key experimental parameters such as the instrument response function.


Soft Matter ◽  
2012 ◽  
Vol 8 (24) ◽  
pp. 6434 ◽  
Author(s):  
Alessandro Spilotros ◽  
Matteo Levantino ◽  
Giorgio Schirò ◽  
Marco Cammarata ◽  
Michael Wulff ◽  
...  

2020 ◽  
Author(s):  
Bryan D. Paulsen ◽  
Ruiheng Wu ◽  
Christopher Takacs ◽  
Hans-Georg Steinrück ◽  
Joseph Strzalka ◽  
...  

<div> <div> <div> <p>The structure and packing of organic mixed ionic-electronic conductors have an outsized effect on transport properties. In operating devices this structure is not fixed but is responsive to changes in electrochemical potential, ion intercalation, and solvent swelling. Towards this end, the dynamic structure of a model organic mixed conductor is characterized using multimodal time-resolved operando techniques. Time-resolved operando X-ray scattering reveals asymmetric rates of structural change during doping and dedoping that do not directly depend on potential or charging dynamics. Time-resolved spectroscopy establishes a link between structural transients and the complex dynamics of electronic charge carrier subpopulations, in particular the polaron-bipolaron equilibrium. These findings provide insight into the factors limiting the response time of organic mixed conductor based devices, and present the first real-time observation of the structural changes during doping and dedoping of a conjugated polymer system via X-ray scattering. </p> </div> </div> </div>


2020 ◽  
Author(s):  
Bryan D. Paulsen ◽  
Ruiheng Wu ◽  
Christopher Takacs ◽  
Hans-Georg Steinrück ◽  
Joseph Strzalka ◽  
...  

<div> <div> <div> <p>The structure and packing of organic mixed ionic-electronic conductors have an outsized effect on transport properties. In operating devices this structure is not fixed but is responsive to changes in electrochemical potential, ion intercalation, and solvent swelling. Towards this end, the dynamic structure of a model organic mixed conductor is characterized using multimodal time-resolved operando techniques. Time-resolved operando X-ray scattering reveals asymmetric rates of structural change during doping and dedoping that do not directly depend on potential or charging dynamics. Time-resolved spectroscopy establishes a link between structural transients and the complex dynamics of electronic charge carrier subpopulations, in particular the polaron-bipolaron equilibrium. These findings provide insight into the factors limiting the response time of organic mixed conductor based devices, and present the first real-time observation of the structural changes during doping and dedoping of a conjugated polymer system via X-ray scattering. </p> </div> </div> </div>


Author(s):  
Eva-Maria Mandelkow ◽  
Eckhard Mandelkow ◽  
Joan Bordas

When a solution of microtubule protein is changed from non-polymerising to polymerising conditions (e.g. by temperature jump or mixing with GTP) there is a series of structural transitions preceding microtubule growth. These have been detected by time-resolved X-ray scattering using synchrotron radiation, and they may be classified into pre-nucleation and nucleation events. X-ray patterns are good indicators for the average behavior of the particles in solution, but they are difficult to interpret unless additional information on their structure is available. We therefore studied the assembly process by electron microscopy under conditions approaching those of the X-ray experiment. There are two difficulties in the EM approach: One is that the particles important for assembly are usually small and not very regular and therefore tend to be overlooked. Secondly EM specimens require low concentrations which favor disassembly of the particles one wants to observe since there is a dynamic equilibrium between polymers and subunits.


Author(s):  
Eva-Maria Mandelkow ◽  
Ron Milligan

Microtubules form part of the cytoskeleton of eukaryotic cells. They are hollow libers of about 25 nm diameter made up of 13 protofilaments, each of which consists of a chain of heterodimers of α-and β-tubulin. Microtubules can be assembled in vitro at 37°C in the presence of GTP which is hydrolyzed during the reaction, and they are disassembled at 4°C. In contrast to most other polymers microtubules show the behavior of “dynamic instability”, i.e. they can switch between phases of growth and phases of shrinkage, even at an overall steady state [1]. In certain conditions an entire solution can be synchronized, leading to autonomous oscillations in the degree of assembly which can be observed by X-ray scattering (Fig. 1), light scattering, or electron microscopy [2-5]. In addition such solutions are capable of generating spontaneous spatial patterns [6].In an earlier study we have analyzed the structure of microtubules and their cold-induced disassembly by cryo-EM [7]. One result was that disassembly takes place by loss of protofilament fragments (tubulin oligomers) which fray apart at the microtubule ends. We also looked at microtubule oscillations by time-resolved X-ray scattering and proposed a reaction scheme [4] which involves a cyclic interconversion of tubulin, microtubules, and oligomers (Fig. 2). The present study was undertaken to answer two questions: (a) What is the nature of the oscillations as seen by time-resolved cryo-EM? (b) Do microtubules disassemble by fraying protofilament fragments during oscillations at 37°C?


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