scholarly journals A comprehensive test set of epoxidation rate constants for iron(iv)–oxo porphyrin cation radical complexes

2015 ◽  
Vol 6 (2) ◽  
pp. 1516-1529 ◽  
Author(s):  
Mala A. Sainna ◽  
Suresh Kumar ◽  
Devesh Kumar ◽  
Simonetta Fornarini ◽  
Maria Elisa Crestoni ◽  
...  

Trends in oxygen atom transfer to Compound I of the P450 models with an extensive test set have been studied and show a preferred regioselectivity of epoxidation over hydroxylation in the gas-phase for the first time.

2010 ◽  
Vol 132 (12) ◽  
pp. 4336-4343 ◽  
Author(s):  
Maria Elisa Crestoni ◽  
Simonetta Fornarini ◽  
Francesco Lanucara ◽  
Jeffrey J. Warren ◽  
James M. Mayer

1998 ◽  
Vol 120 (31) ◽  
pp. 7869-7874 ◽  
Author(s):  
Maria Anita Mendes ◽  
Luiz Alberto B. Moraes ◽  
Regina Sparrapan ◽  
Marcos N. Eberlin ◽  
Risto Kostiainen ◽  
...  

Author(s):  
Devendra Singh ◽  
Devesh Kumar ◽  
Sam P. de Visser

Methane hydroxylation is a thermochemically difficult process due to the strength of the C-H bond that needs to be broken in the process. In Nature only the methane monoxygenases have a catalytic center that is active enough to perform this task. Other metalloenzymes, such as, mononuclear iron monoxygenases and dioxygenases, including the cytochromes P450, are not known to catalyze methane hydroxylation. The cytochromes P450 contain an iron heme group that in a catalytic cycle is converted into an iron(IV)-oxo heme cation radical (Compound I). To gain insight into the features that affect methane hydroxylation by Compound I and synthetic model complexes, we have done a detailed computational study. Thus, we investigated the chemical properties of iron(IV)-oxo porphyrins with varying axial ligands, including SH<sup>−</sup>, F<sup>−</sup>, OH<sup>−</sup>, CN<sup>−</sup>, CF<sub>3</sub>COO<sup>−</sup> and CH<sub>3</sub>COO<sup>−</sup>. In addition, we calculated the methane hydroxylation pathways for a selection of these oxidants and rationalize the obtained trends with thermochemical cycles and valence bond schemes. In general, the rate determining hydrogen atom abstraction barrier is dependent on the π<sub>xz</sub>/π*<sub>xz</sub> energy splitting along the Fe−O bond, the excitation energy from π<sub>xz</sub> to a<sub>2u</sub>, as well as the bond dissociation energies of the methane C−H bond and the newly formed O−H bond. Our studies predict that iron(IV)-oxo porphyrin cation radical models with hydroxide as axial ligand should be efficient oxidants of substrate hydroxylation reactions and able to activate methane at room temperature. However, changing the axial ligand to a weaker electron donating group decreases its activity and raises the hydrogen atom abstraction barriers dramatically. These studies show that subtle modifications to the oxidant can have a great impact on the catalytic ability of the active center.


2011 ◽  
Vol 133 (40) ◽  
pp. 15874-15877 ◽  
Author(s):  
Katharine A. Prokop ◽  
Heather M. Neu ◽  
Sam P. de Visser ◽  
David P. Goldberg

2020 ◽  
Vol 21 (19) ◽  
pp. 7133
Author(s):  
Calvin W. Z. Lee ◽  
M. Qadri E. Mubarak ◽  
Anthony P. Green ◽  
Sam P. de Visser

Heme peroxidases have important functions in nature related to the detoxification of H2O2. They generally undergo a catalytic cycle where, in the first stage, the iron(III)–heme–H2O2 complex is converted into an iron(IV)–oxo–heme cation radical species called Compound I. Cytochrome c peroxidase Compound I has a unique electronic configuration among heme enzymes where a metal-based biradical is coupled to a protein radical on a nearby Trp residue. Recent work using the engineered Nδ-methyl histidine-ligated cytochrome c peroxidase highlighted changes in spectroscopic and catalytic properties upon axial ligand substitution. To understand the axial ligand effect on structure and reactivity of peroxidases and their axially Nδ-methyl histidine engineered forms, we did a computational study. We created active site cluster models of various sizes as mimics of horseradish peroxidase and cytochrome c peroxidase Compound I. Subsequently, we performed density functional theory studies on the structure and reactivity of these complexes with a model substrate (styrene). Thus, the work shows that the Nδ-methyl histidine group has little effect on the electronic configuration and structure of Compound I and little changes in bond lengths and the same orbital occupation is obtained. However, the Nδ-methyl histidine modification impacts electron transfer processes due to a change in the reduction potential and thereby influences reactivity patterns for oxygen atom transfer. As such, the substitution of the axial histidine by Nδ-methyl histidine in peroxidases slows down oxygen atom transfer to substrates and makes Compound I a weaker oxidant. These studies are in line with experimental work on Nδ-methyl histidine-ligated cytochrome c peroxidases and highlight how the hydrogen bonding network in the second coordination sphere has a major impact on the function and properties of the enzyme.


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