Embedding principal component analysis inference in expert sensors for big data applications

Author(s):  
Rodrigo Marino ◽  
Jose M. Lanza-Gutierrez ◽  
Teresa Riesgo
2020 ◽  
Author(s):  
Danrley Fernandes ◽  
Mariane G. Kulik ◽  
Diogo J. S. Machado ◽  
Jeroniza N. Marchaukoski ◽  
Fabio O. Pedrosa ◽  
...  

AbstractThe rSWeeP package is an R implementation of the SWeeP model, designed to handle Big Data. rSweeP meets to the growing demand for efficient methods of heuristic representation in the field of Bioinformatics, on platforms accessible to the entire scientific community. We explored the implementation of rSWeeP using a dataset containing 31,386 viral proteomes, performing phylogenetic and principal component analysis. As a case study we analyze the viral strains closest to the SARS-CoV, responsible for the current pandemic of COVID-19, confirming that rSWeeP can accurately classify organisms taxonomically. rSWeeP package is freely available at https://bioconductor.org/packages/release/bioc/html/rSWeeP.html.


Author(s):  
Jianqing Fan ◽  
Qiang Sun ◽  
Wen-Xin Zhou ◽  
Ziwei Zhu

Symmetry ◽  
2020 ◽  
Vol 12 (1) ◽  
pp. 182
Author(s):  
Fengmin Yu ◽  
Liming Liu ◽  
Nanxiang Yu ◽  
Lianghao Ji ◽  
Dong Qiu

Recently, with the popularization of intelligent terminals, research on intelligent big data has been paid more attention. Among these data, a kind of intelligent big data with functional characteristics, which is called functional data, has attracted attention. Functional data principal component analysis (FPCA), as an unsupervised machine learning method, plays a vital role in the analysis of functional data. FPCA is the primary step for functional data exploration, and the reliability of FPCA plays an important role in subsequent analysis. However, classical L2-norm functional data principal component analysis (L2-norm FPCA) is sensitive to outliers. Inspired by the multivariate data L1-norm principal component analysis methods, we propose an L1-norm functional data principal component analysis method (L1-norm FPCA). Because the proposed method utilizes L1-norm, the L1-norm FPCs are less sensitive to the outliers than L2-norm FPCs which are the characteristic functions of symmetric covariance operator. A corresponding algorithm for solving the L1-norm maximized optimization model is extended to functional data based on the idea of the multivariate data L1-norm principal component analysis method. Numerical experiments show that L1-norm FPCA proposed in this paper has a better robustness than L2-norm FPCA, and the reconstruction ability of the L1-norm principal component analysis to the original uncontaminated functional data is as good as that of the L2-norm principal component analysis.


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