scholarly journals The magnitude of the intrinsic rate constant: How deep can association reactions be in the diffusion limited regime?

2017 ◽  
Vol 147 (18) ◽  
pp. 184108 ◽  
Author(s):  
Adithya Vijaykumar ◽  
Pieter Rein ten Wolde ◽  
Peter G. Bolhuis
Author(s):  
Ikechukwu I. Udema

Background: There is a need for equations with which to calculate the intrinsic rate constants that can further characterise enzyme catalysed reactions despite what seems to be conventional differences in methodology in the literature. Methods: Theoretical, experimental (Bernfeld method), and computational methods. Objectives: 1) To derive an alternative intrinsic rate constant equations consistent with their dimension, 2) derive electrostatic intermolecular potential energy equation, (xe), 3) calculate the intrinsic rate constants for forward (k1) and reverse (k2) reactions, and 4) define the dependence or otherwise of kinetic constants on diffusion and deduce the catalytic efficiency. Results and Discussion: The ultimate quantitative results were ~ 64.69 ±  0.49 exp (+3)/ min (k2) (and kd (s) = ~ 60.66 exp (+3)/ min), ~ 1594.48 ± 11.99 exp (+3) exp (+3) L/mol.min (k1) (and ka (s) = ~1482.47 exp (+3) L/mol.min), ~ 58.00 ± 10.83 exp (+3) /min, the apparent rate constant for reverse reaction (kb), and ~ 75.83 ± 10.83 exp (+3) /min, the rate constant for product formation (k3). The catalytic efficiency was: 3.025 exp (+ 9) L / mol.     Conclusion: The relevant equations were derived. Based on the derived equations the intrinsic rate constants can be calculated. Since k3 is > kb, then k3 is diffusion controlled and it appears that the enzyme has reached kinetic perfection. The evaluation of rate constants either from the perspective of diffusion dependency or independency cannot be valid without Avogadro number.


2008 ◽  
Vol 86 (3) ◽  
pp. 225-229 ◽  
Author(s):  
Basim H.M. Asghar ◽  
Michael R Crampton ◽  
Chukwuemeka Isanbor

1H NMR studies in [2H6]-DMSO show that the carbanion 4 from bis(phenylsulfonyl)methane reacts with 4,6-dinitrobenzofuroxan to yield a σ-adduct that undergoes base-catalysed elimination to yield an alkene derivative. Rate constants, measured spectrophotometrically, are reported for the corresponding reactions in methanol of 4 with 4-nitrobenzofurazan and some derivatives that give adducts at the 5-position. The intrinsic rate constant, ko, for this process has a value of 1.5 ± 0.5. The 5-adducts undergo methoxide-catalysed elimination of phenylsulfinic acid to yield alkene derivatives and rate constants for this process are reported.Key words: carbanions, 4-nitrobenzofurazan, σ-adducts, elimination reactions.


2018 ◽  
Vol 82 (4) ◽  
pp. 939-942 ◽  
Author(s):  
Claire. L. Corkhill ◽  
Adam J. Fisher ◽  
Denis M. Strachan ◽  
Russell J. Hand ◽  
Neil C. Hyatt

AbstractWe revise the data fitting in our original paper [The dissolution rates of simulated UK Magnox - ThORP blend nuclear waste glass as a function of pH, temperature and waste loading, Miner. Mag.79 (2015) 1529–1542]. The intrinsic rate constant data were calculated incorrectly, the corrected data are presented herein. To support the corrected analysis we have also taken the opportunity to report some additional 90°C data. The conclusions of the original paper remain sound.


Symmetry ◽  
2020 ◽  
Vol 12 (10) ◽  
pp. 1744
Author(s):  
Changsun Eun

We present a simple reaction model to study the influence of the size, number, and spatial arrangement of reactive patches on a reactant placed on a plane. Specifically, we consider a reactant whose surface has an N × N square grid structure, with each square cell (or patch) being chemically reactive or inert for partner reactant molecules approaching the cell via diffusion. We calculate the rate constant for various cases with different reactive N × N square patterns using the finite element method. For N = 2, 3, we determine the reaction kinetics of all possible reactive patterns in the absence and presence of periodic boundary conditions, and from the analysis, we find that the dependences of the kinetics on the size, number, and spatial arrangement are similar to those observed in reactive patches on a sphere. Furthermore, using square reactant models, we present a method to significantly increase the rate constant by sequentially breaking the patches into smaller patches and arranging them symmetrically. Interestingly, we find that a reactant with a symmetric patch distribution has a power–law relation between the rate constant and the number of reactive patches and show that this works well when the total reactive area is much less than the total surface area of the reactant. Since our N × N discrete models enable us to examine all possible reactive cases completely, they provide a solid understanding of the surface reaction kinetics, which would be helpful for understanding the fundamental aspects of the competitions between reactive patches arising in real applications.


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