scholarly journals Correction to Supporting Information for Brown and Sivak, Allocating dissipation across a molecular machine cycle to maximize flux

2017 ◽  
Vol 114 (45) ◽  
pp. E9754-E9754
2017 ◽  
Vol 114 (42) ◽  
pp. 11057-11062 ◽  
Author(s):  
Aidan I. Brown ◽  
David A. Sivak

Biomolecular machines consume free energy to break symmetry and make directed progress. Nonequilibrium ATP concentrations are the typical free energy source, with one cycle of a molecular machine consuming a certain number of ATP, providing a fixed free energy budget. Since evolution is expected to favor rapid-turnover machines that operate efficiently, we investigate how this free energy budget can be allocated to maximize flux. Unconstrained optimization eliminates intermediate metastable states, indicating that flux is enhanced in molecular machines with fewer states. When maintaining a set number of states, we show that—in contrast to previous findings—the flux-maximizing allocation of dissipation is not even. This result is consistent with the coexistence of both “irreversible” and reversible transitions in molecular machine models that successfully describe experimental data, which suggests that, in evolved machines, different transitions differ significantly in their dissipation.


2019 ◽  
Author(s):  
Haoke Zhang ◽  
Lili Du ◽  
Lin Wang ◽  
Junkai Liu ◽  
Qing Wan ◽  
...  

<p>Building molecular machine has long been a dream of scientists as it is expected to revolutionize many aspects of technology and medicine. Implementing the solid-state molecular motion is the prerequisite for a practical molecular machine. However, few works on solid-state molecular motion have been reported and it is almost impossible to “see” the motion even if it happens. Here the light-driven molecular motion in solid state is discovered in two non-conjugated molecules <i>s</i>-DPE and <i>s</i>-DPE-TM, resulting in the formation of excited-state though-space complex (ESTSC). Meanwhile, the newly formed ESTSC generates an abnormal visible emission which is termed as clusteroluminescence. Notably, the original packing structure can recover from ESTSC when the light source is removed. These processes have been confirmed by time-resolved spectroscopy and quantum mechanics calculation. This work provides a new strategy to manipulate and “see” solid-state molecular motion and gains new insights into the mechanistic picture of clusteroluminescence.<br></p>


2000 ◽  
Author(s):  
Arvydas Tamulis ◽  
Jelena Tamuliene ◽  
Mindaugas L. Balevicius ◽  
Jean-Michel Nunzi

Symmetry ◽  
2019 ◽  
Vol 11 (10) ◽  
pp. 1249 ◽  
Author(s):  
Bruns

Cyclodextrins (CDs) are cone-shaped molecular rings that have been widely employed in supramolecular/host–guest chemistry because of their low cost, high biocompatibility, stability, wide availability in multiple sizes, and their promiscuity for binding a range of molecular guests in water. Consequently, CD-based host–guest complexes are often employed as templates for the synthesis of mechanically bonded molecules (mechanomolecules) such as catenanes, rotaxanes, and polyrotaxanes in particular. The conical shape and cyclodirectionality of the CD “bead” gives rise to a symmetry-breaking effect when it is threaded onto a molecular “string”; even symmetrical guests are rendered asymmetric by the presence of an encircling CD host. This review focuses on the stereochemical implications of this symmetry-breaking effect in mechanomolecules, including orientational isomerism, mechanically planar chirality, and topological chirality, as well as how they support applications in regioselective and stereoselective chemical synthesis, the design of molecular machine prototypes, and the development of advanced materials.


2005 ◽  
Vol 44 (1) ◽  
pp. 87-91 ◽  
Author(s):  
Woo Sung Jeon ◽  
Eunju Kim ◽  
Young Ho Ko ◽  
Ilha Hwang ◽  
Jae Wook Lee ◽  
...  

2017 ◽  
Vol 1861 (1) ◽  
pp. 3154-3163 ◽  
Author(s):  
Danilo di Maio ◽  
Balasubramanian Chandramouli ◽  
Robert Yan ◽  
Giuseppe Brancato ◽  
Annalisa Pastore

2017 ◽  
Vol 8 (1) ◽  
Author(s):  
Matthijs R. Panman ◽  
Chris N. van Dijk ◽  
Adriana Huerta-Viga ◽  
Hans J. Sanders ◽  
Bert H. Bakker ◽  
...  

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