Photoaffinity labeling of DNA template-primer binding site inEscherichia coliDNA polymerase I. Identification of involved amino acids.

Journal of Biological Chemistry ◽

10.1074/jbc.270.6.2879 ◽

1995 ◽

Vol 270 (6) ◽

pp. 2879-2879 ◽

Author(s):

Virendra N. Pandey ◽

Neerja Kaushik ◽

Mukund J. Modak

Keyword(s):

Amino Acids ◽

Binding Site ◽

Photoaffinity Labeling ◽

Primer Binding Site ◽

Polymerase I ◽

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Photoaffinity labeling of DNA template-primer binding site in Escherichia coli DNA polymerase I. Identification of involved amino acids.

Journal of Biological Chemistry ◽

10.1016/s0021-9258(17)31878-1 ◽

1994 ◽

Vol 269 (34) ◽

pp. 21828-21834

Author(s):

V.N. Pandey ◽

N. Kaushik ◽

M.J. Modak

Keyword(s):

Escherichia Coli ◽

Amino Acids ◽

Binding Site ◽

Dna Polymerase ◽

Photoaffinity Labeling ◽

Primer Binding Site ◽

Dna Polymerase I ◽

Polymerase I ◽

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Direct Photoaffinity Labeling of Cellular Retinoic Acid-Binding Protein I (CRABP-I) withall-trans-Retinoic Acid: Identification of Amino Acids in the Ligand Binding Site†

Biochemistry ◽

10.1021/bi000321n ◽

2000 ◽

Vol 39 (41) ◽

pp. 12568-12574 ◽

Author(s):

Guangping Chen ◽

Anna Radominska-Pandya

Keyword(s):

Amino Acids ◽

Retinoic Acid ◽

Ligand Binding ◽

Binding Site ◽

Binding Protein ◽

Photoaffinity Labeling ◽

Ligand Binding Site ◽

Acid Binding Protein ◽

Trans Retinoic Acid ◽

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Highly selective affinity labeling of the primer-binding site of E.coli DNA polymerase I

FEBS Letters ◽

10.1016/0014-5793(90)80478-2 ◽

1990 ◽

Vol 272 (1-2) ◽

pp. 181-183 ◽

Author(s):

R.L. Mitina ◽

A.A. Mustaev ◽

E.F. Zaychikov ◽

V.V. Khomov ◽

O.I. Lavrik

Keyword(s):

Binding Site ◽

Dna Polymerase ◽

Primer Binding Site ◽

Affinity Labeling ◽

Dna Polymerase I ◽

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Isolation of novel human retrovirus-related sequences by hybridization to synthetic oligonucleotides complementary to the tRNA(Pro) primer-binding site.

Journal of Virology ◽

10.1128/jvi.61.7.2071-2075.1987 ◽

1987 ◽

Vol 61 (7) ◽

pp. 2071-2075 ◽

Author(s):

B Kröger ◽

I Horak

Keyword(s):

Binding Site ◽

Primer Binding Site ◽

Human Retrovirus ◽

Synthetic Oligonucleotides

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Identification of sequences downstream of the primer binding site that are important for efficient replication of human immunodeficiency virus type 1.

Journal of Virology ◽

10.1128/jvi.71.8.6003-6010.1997 ◽

1997 ◽

Vol 71 (8) ◽

pp. 6003-6010 ◽

Author(s):

X Li ◽

C Liang ◽

Y Quan ◽

R Chandok ◽

M Laughrea ◽

...

Keyword(s):

Human Immunodeficiency Virus ◽

Binding Site ◽

Human Immunodeficiency Virus Type ◽

Primer Binding Site ◽

Immunodeficiency Virus ◽

Efficient Replication

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Deletion of cAMP-binding site B in the regulatory subunit of cAMP-dependent protein kinase alters the photoaffinity labeling of site A.

Journal of Biological Chemistry ◽

10.1016/s0021-9258(19)81353-4 ◽

1988 ◽

Vol 263 (34) ◽

pp. 18247-18252

Author(s):

G E Ringheim ◽

L D Saraswat ◽

J Bubis ◽

S S Taylor

Keyword(s):

Protein Kinase ◽

Binding Site ◽

Photoaffinity Labeling ◽

Regulatory Subunit ◽

Dependent Protein Kinase ◽

Camp Dependent Protein Kinase ◽

Dependent Protein

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Template primer-dependent binding of 5'-fluorosulfonyl-benzoyldeoxyadenosine by Escherichia coli DNA polymerase I. Identification of arginine 682 as the binding site and its implication in catalysis.

Journal of Biological Chemistry ◽

10.1016/s0021-9258(19)39647-4 ◽

1990 ◽

Vol 265 (7) ◽

pp. 3679-3684

Author(s):

V N Pandey ◽

N A Kaushik ◽

D S Pradhan ◽

M J Modak

Keyword(s):

Escherichia Coli ◽

Binding Site ◽

Dna Polymerase ◽

Dna Polymerase I ◽

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Adventitious match probability for autosomal profiles when primer binding site mutation is possible

Forensic Science International Genetics ◽

10.1016/j.fsigen.2016.06.011 ◽

2016 ◽

Vol 24 ◽

pp. 143-147

Author(s):

Susan Pope ◽

Ian Evett ◽

Roberto Puch-Solis

Keyword(s):

Binding Site ◽

Primer Binding Site ◽

Site Mutation ◽

Match Probability

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Structural Reorganization of the Acetylcholine Binding Site of the Torpedo Nicotinic Receptor as Revealed by Dynamic Photoaffinity Labeling

ChemBioChem ◽

10.1002/1439-7633(20020703)3:7<652::aid-cbic652>3.0.co;2-l ◽

2002 ◽

Vol 3 (7) ◽

pp. 652 ◽

Author(s):

Thomas Grutter ◽

Sonia Bertrand ◽

Florence Kotzyba-Hibert ◽

Daniel Bertrand ◽

Maurice Goeldner

Keyword(s):

Binding Site ◽

Nicotinic Receptor ◽

Photoaffinity Labeling ◽

Structural Reorganization

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The REB1 site is an essential component of a terminator for RNA polymerase I in Saccharomyces cerevisiae

Molecular and Cellular Biology ◽

10.1128/mcb.13.1.649-658.1993 ◽

1993 ◽

Vol 13 (1) ◽

pp. 649-658

Author(s):

W H Lang ◽

R H Reeder

Keyword(s):

Saccharomyces Cerevisiae ◽

Rna Polymerase ◽

Protein Binding ◽

Binding Site ◽

Rna Polymerase I ◽

Recognition Sequence ◽

Sequence Context ◽

Yeast Saccharomyces Cerevisiae ◽

Essential Component ◽

We have identified a terminator for transcription by RNA polymerase I in the genes coding for rRNA of the yeast Saccharomyces cerevisiae. The terminator is located 108 bp downstream of the 3' end of the mature 25S rRNA and shares several characteristics with previously studied polymerase I terminators in the vertebrates. For example, the yeast terminator is orientation dependent, is inhibited by its own sequence, and forms RNA 3' ends 17 +/- 2 bp upstream of an essential protein binding site. The recognition sequence for binding of the previously cloned REB1 protein (Q. Ju, B. E. Morrow, and J. R. Warner, Mol. Cell. Biol. 10:5226-5234, 1990) is an essential component of the terminator. In addition, the efficiency of termination depends upon sequence context extending at least 12 bp upstream of the REB1 site.

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