scholarly journals PCR amplification and polymorphism analysis of the intergenic spacer region of ribosomal DNA in Tuber borchii

2002 ◽  
Vol 157 (1) ◽  
pp. 69-74 ◽  
Author(s):  
Pasquapina Ciarmela ◽  
Lucia Potenza ◽  
Luigi Cucchiarini ◽  
Sabrina Zeppa ◽  
Vilberto Stocchi
2000 ◽  
Vol 38 (4) ◽  
pp. 1698-1700 ◽  
Author(s):  
Véronique Roux ◽  
Susannah J. Eykyn ◽  
Sarah Wyllie ◽  
Didier Raoult

We report a case of endocarditis in a human infected withBartonella vinsonii subsp. berkhoffii, which causes bacteremia and endocarditis in dogs. Bacterial identification was established by PCR amplification and sequencing of an intergenic spacer region (ITS1), 16S ribosomal DNA, and a gene encoding citrate synthase (gltA). Bartonella antibodies were detected by immunofluorescence.


Plant Disease ◽  
2011 ◽  
Vol 95 (8) ◽  
pp. 951-959 ◽  
Author(s):  
A. Belgrove ◽  
C. Steinberg ◽  
A. Viljoen

Nonpathogenic Fusarium oxysporum endophytes from healthy banana roots were evaluated for their ability to reduce Fusarium wilt of banana (Panama disease). Isolates were identified morphologically and by using species-specific primers. Pathogenicity was confirmed by inoculating banana plantlets in the greenhouse. Nonpathogenic F. oxysporum isolates were grouped into 14 haplotype groups by polymerase chain reaction restriction fragment length polymorphism analysis of the intergenic spacer region, and representative isolates evaluated for biocontrol of F. oxysporum f. sp. cubense. In the greenhouse, 10 nonpathogenic F. oxysporum isolates were able to significantly reduce Fusarium wilt of banana. The isolate that protected banana plantlets best in the greenhouse, a nonpathogenic F. oxysporum from the root rhizosphere, and Pseudomonas fluorescens WCS 417 were then field tested. When the putative biological control organisms were tested in the field, neither the nonpathogenic F. oxysporum, P. fluorescens, nor combinations thereof reduced Fusarium wilt development significantly. A number of factors could contribute to the lack of field protection, including soil microbial and chemical composition and reduced survival of biocontrol organisms in banana roots. A lack of knowledge regarding the etiology of Fusarium wilt of ‘Cavendish’ banana in the subtropics and the effect of F. oxysporum f. sp. cubense race and banana cultivar in protection of banana by biocontrol organisms should be further investigated.


2005 ◽  
Vol 132 (1-2) ◽  
pp. 57-61 ◽  
Author(s):  
Aymeric De Bruyne ◽  
Hélène Yera ◽  
Franck Le Guerhier ◽  
Pascal Boireau ◽  
Jean Dupouy-Camet

1999 ◽  
Vol 65 (9) ◽  
pp. 4264-4267 ◽  
Author(s):  
G. W. Tannock ◽  
A. Tilsala-Timisjarvi ◽  
S. Rodtong ◽  
J. Ng ◽  
K. Munro ◽  
...  

Lactobacillus isolates were identified by PCR amplification and sequencing of the region between the 16S and 23S rRNA genes (spacer region). The sequences obtained from the isolates were compared to those of reference strains held in GenBank. A similarity of 97.5% or greater was considered to provide identification. To check the reliability of the method, the V2-V3 region of the 16S rRNA gene was amplified and sequenced in the case of isolates whose spacer region sequences were less than 99% similar to that of a reference strain. Confirmation of identity was obtained in all instances. Spacer region sequencing provided rapid and accurate identification ofLactobacillus isolates obtained from gastrointestinal, yoghurt, and silage samples. It had an advantage over 16S V2-V3 sequence comparisons because it distinguished between isolates ofLactobacillus casei and Lactobacillus rhamnosus.


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