East African cassava mosaic virus.

Author(s):  
Olufemi Joseph Alabi ◽  
Rabson Mulenga

Abstract Like other CMGs, cassava is the primary host of East African cassava mosaic virus (EACMV) and related viruses, although the virus has been detected in other plant species (Ogbe et al., 2006; Alabi et al. 2015). Analysis of the genomes of different isolates of EACMV-type viruses show considerable genetic variability and genome plasticity relative to ACMV isolates. The primary means of virus spread is via movement of contaminated vegetative cassava cuttings and secondary spread occurs via the whitefly vector, Bemisia tabaci. Perhaps the most notable documentation of invasiveness of EACMV-type viruses is the regional pandemic of a severe CMD in East Africa caused by EACMV-UG which began in Uganda in the early to mid-1990s (Gibson et al., 1996; Otim-Nape et al., 1997) on popular and widely cultivated cassava varieties and soon spread to other countries in East Africa, including Kenya and Tanzania (Otim-Nape et al., 1997; Legg, 1999). The pandemic resulted in famine-related deaths (Otim-Nape et al., 1998) due to complete devastation of affected cassava farms in the region. EACMV is not on the IUCN or ISSG alert list.

Plant Disease ◽  
1998 ◽  
Vol 82 (10) ◽  
pp. 1172-1172 ◽  
Author(s):  
V. N. Fondong ◽  
J. S. Pita ◽  
C. Rey ◽  
R. N. Beachy ◽  
C. M. Fauquet

Cassava mosaic disease (CMD) occurs in all cassava-growing regions of Africa, India, and Sri Lanka. Characterized by mosaic and distortion of cassava leaves and reduced plant growth, causing high yield losses, CMD is caused by geminiviruses (genus Begomovirus, family Geminiviridae) transmitted through infected cuttings or by the whitefly, Bemisia tabaci. Three such geminiviruses have been described: African cassava mosaic virus (ACMV) occurs in most of the cassava-producing zones of Africa; East African cassava mosaic virus (EACMV) in East Africa; and Indian cassava mosaic virus (ICMV) in the Indian subcontinent (1). The two components of ACMV and ICMV genomes, DNA-A and DNA-B, have been sequenced; only DNA-A of EACMV has been identified and sequenced. Variations in symptom expression and severity within the same cassava variety have been observed in Cameroon. To determine the nature of the virus species inducing such variations, 50 samples were collected from CMD-infected plants in the savannah and rainforest zones of Cameroon: 2 from the sahel/savannah plain, 13 from the western highland savannah, and 35 from the main cassava-producing belt of the southwestern rainforest. There is a high incidence of CMD in the rainforest region, with some farms completely infected, while in the savannah regions farms generally have less than 25% incidence. Variation in symptom expression was more common in the rainforest region. Samples were collected from plants with distinct symptoms and/or different extents of symptom severity, then analyzed with the polymerase chain reaction (PCR) with specific primers: JSP1, ATG TCG AAG CGA CCA GGA GAT; JSP2, TGT TTA TTA ATT GCC AAT ACT; and JSP3, CCT TTA TTA ATT TGT CAC TGC. Primer JSP1 anneals to the 5′ end of the coat protein (CP) of ACMV and EACMV; primers JSP2 and JSP3 anneal to the 3′ ends of ACMV and EACMV, respectively. Virus identification was based on presence of an amplified fragment of either virus. ACMV was detected in all 50 samples; EACMV was detected in 8. All samples infected with EACMV were from the southwestern rainforest of Cameroon and were more severely affected by the disease than single infected plants. Previous reports have limited occurrence of EACMV to East Africa (1). This is the first report of the occurrence of EACMV in West Africa. The CP gene of three isolates of EACMV from Cameroon (EACMV/CM) was sequenced from cloned PCR products. There was a high CP nucleotide sequence identity (>99%) with only two amino acid differences among all three EACMV isolates. In contrast, there was a rather low sequence identity (94%) with EACMV/TZ from Tanzania (2), suggesting they may belong to a previously undescribed West African strain of EACMV. This indicates the geminiviruses causing CMD in Africa are more widely distributed than previously reported. None of the Cameroon isolates showed the type of recombination of the EACMV isolate from Uganda (EACMV/ UG) (having the CP core segment the identical to the corresponding ACMV CP sequence) (2). This emphasizes the need for characterization of the viruses causing CMD in different cassava-growing regions of Africa since appropriate control strategies depend on adequate knowledge of disease etiology. References: (1) Y. G. Hong et al. J. Gen. Virol. 74:2437, 1993. (2) X. Zhou et al. J. Gen. Virol. 78:2101, 1997.


Plant Disease ◽  
2004 ◽  
Vol 88 (1) ◽  
pp. 17-22 ◽  
Author(s):  
H. K. Were ◽  
S. Winter ◽  
E. Maiss

A survey of cassava viruses was conducted in major cassava-growing regions of Kenya. A total of 185 leaf samples and 62 stem cuttings from plants with viral disease symptoms were collected and analyzed by biological, electron microscopy, enzyme-linked immunosorbent assay, and polymerase chain reaction. All samples from western Kenya had cassava begomoviruses (African cassava mosaic virus [ACMV], East African cassava mosaic virus [EACMV], and Uganda variant [EACMV-UG]) in either single or in mixed infection. However, all samples from the Coast region were infected with only EACMV, a begomovirus. In addition, 15 samples had mixed infections of EACMV and three other hitherto unidentified filamentous viruses. The viruses observed were 200, 500, 650, and 750 nm long, respectively. In addition to rod-shaped and some flexuous viruses, as seen in a crude sap preparation, pinwheels also were observed, indicating a possible association of some of the viruses with the Potyviridae family. The symptoms induced by these viruses in Nicotiana benthamiana were very severe and often caused about 50% death of the test plants. Back inoculation onto cassava resulted in 100% infections. This finding provides evidence that, other than begomoviruses that cause serious diseases of cassava in Africa, filamentous viruses also are present and, despite their limited distribution, they could reach local significance and, most probably, be as serious as begomoviruses. The implications of these findings are discussed and recommendations for future work suggested.


Plant Disease ◽  
2003 ◽  
Vol 87 (3) ◽  
pp. 229-232 ◽  
Author(s):  
F. O. Ogbe ◽  
G. Thottappilly ◽  
A. G. O. Dixon ◽  
G. I. Atiri ◽  
H. D. Mignouna

In a survey for cassava mosaic begomoviruses conducted in 1997 and 1998 in Nigeria, East African cassava mosaic virus (EACMV) was detected by the polymerase chain reaction together with African cassava mosaic virus (ACMV) in 27 out of 290 cassava leaf samples of infected plants from 254 farmers' fields in five agroecological zones. One plant was infected with EACMV only. Five variant isolates of EACMV were observed based on their reactions to primers that could detect Cameroonian and East African strains of EACMV. Isolates of variants 1 and 3 occurred mostly in the derived or coastal and southern Guinea savannahs, while variants 4 and 5 predominated in the humid forest region. Isolates of variant 2 were widely distributed across the three agroecologies. EACMV was not detected in the northern Guinea savannah and arid and semiarid zones. Most doubly infected plants showed more severe symptoms than plants with single infection. Occurrence of EACMV variants together with ACMV detection and information about their distribution in Nigeria could be used for the selection of cassava clones in cassava mosaic disease resistance programs.


2001 ◽  
Vol 82 (3) ◽  
pp. 655-665 ◽  
Author(s):  
J. S. Pita ◽  
V. N. Fondong ◽  
A. Sangaré ◽  
G. W. Otim-Nape ◽  
S. Ogwal ◽  
...  

The molecular variability of cassava geminiviruses occurring in Uganda was investigated in this study. Infected cassava plants and whiteflies were collected from cassava plantings in different geographical areas of the country and PCR was used for molecular characterization of the viruses. Two complete sequences of DNA-A and -B from African cassava mosaic virus (ACMV), two DNA-A sequences from East African cassava mosaic virus (EACMV), two DNA-B sequences of EACMV and the partial DNA-A nucleotide sequence of a new virus strain isolated in Uganda, EACMV-UG3, are reported here. Analysis of naturally infected cassava plants showed various assortments of DNA-A and DNA-B of the Ugandan viruses, suggesting the occurrence of natural inter- and intraspecies pseudorecombinations and a pattern of cassava mosaic disease (CMD) more complex than previously reported. EACMV-UG2 DNA-A, which contains a recombinant fragment between ACMV and EACMV-UG1 in the coat protein gene that resembles virus from Tanzania, was widespread in the country and always associated with EACMV-UG3 DNA-B, which probably resulted from another natural recombination event. Mixed infections of ACMV-UG and EACMV-UG in cassava and whiteflies were detected in most of the regions where both viruses occurred. These mixed-infected samples always showed extremely severe CMD symptoms, suggesting a synergistic interaction between ACMV-UG and EACMV-UG2. The first demonstration is provided of infectivity of EACMV clones to cassava, proving conclusively that the pseudorecombinant EACMV-UG2 DNA-A+EACMV-UG3 DNA-B is a causal agent of CMD in Uganda.


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