Testing species limits of New ZealandPlantago(Plantaginaceae) using internal transcribed spacer (ITS) DNA sequences

2010 ◽  
Vol 48 (3-4) ◽  
pp. 205-224 ◽  
Author(s):  
ML Tay ◽  
HM Meudt ◽  
PJ Garnock-Jones ◽  
PA Ritchie
Keyword(s):  
Dna Sequences ◽  
Internal Transcribed Spacer ◽  
Species Limits ◽  
Its Dna Sequences

Phylogeny of the Genus Noccaea (Brassicaceae) and a Critical Review of its Generic Circumscription

2019 ◽  
Vol 104 (3) ◽  
pp. 339-354 ◽  
Author(s):  
Barış Özüdoğru ◽  
Kurtuluş Özgişi ◽  
Burcu Tarıkahya-Hacıoğlu ◽  
Atilla Ocak ◽  
Klaus Mummenhoff ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Dna Sequences ◽  
Internal Transcribed Spacer ◽  
Full Range ◽  
Taxonomic Status ◽  
New Combinations ◽  
Molecular Studies ◽  
Radical Revision ◽  
Its Dna Sequences ◽  
First Time

Noccaea Moench is taxonomically one of the most problematic genera of the Brassicaceae. The radical revision of Thlaspi L. s.l. by Meyer in 1973 (Meyer, 1973) split it into 12 segregate genera, including Noccaea, but subsequent molecular studies suggested that this complex includes at least four unrelated genera (Thlaspi s. str., Mummenhoffia Esmailbegi & Al-Shehbaz, Noccidium F. K. Mey., and Noccaea). Although several taxonomic treatments have since been proposed to sort out the systematic problems of Noccaea, debates are still ongoing. Some authors have argued that all segregates of Thlaspi should be considered as independent but related genera, whereas others recognize them as synonyms of a large and polymorphic Noccaea. In this study, we present the first extensively sampled phylogenetic analysis of tribe Coluteocarpeae (Thlaspi segregates including Noccaea) using internal transcribed spacer (ITS) DNA sequences from 92 of the ca. 130 species (70%) in the tribe (39 studied here for the first time) and plastidic trnL-F regions from 73 species (42 studied here for the first time), representing the full range of morphological variation and geographical distribution. All main clades are discussed in detail, and the taxonomic status of all Thlaspi s.l. segregates is evaluated against recent taxonomic treatments. In particular, the tribal placement of Noccidium is changed to Coluteocarpeae, and the genus Pseudosempervivum (Boiss.) Grossh. is reduced to synonymy of Noccaea. The new name N. mummenhoffiana Özüdoğru & Al-Shehbaz and the new combinations N. aucheri (Boiss.) Özüdoğru & Al-Shehbaz and N. sempervivum (Boiss. & Balansa) Özüdoğru & Al-Shehbaz are proposed.

Phylogenetic relationships in the tribe Alysseae (Brassicaceae) based on nuclear ribosomal ITS DNA sequences

Botany ◽  
2008 ◽  
Vol 86 (4) ◽  
pp. 315-336 ◽  
Author(s):  
Suzanne I. Warwick ◽  
Connie A. Sauder ◽  
Ihsan A. Al-Shehbaz
Keyword(s):  
Maximum Likelihood ◽  
Dna Sequences ◽  
Phylogenetic Relationships ◽  
Maximum Parsimony ◽  
Internal Transcribed Spacer ◽  
Sequence Data ◽  
Its Region ◽  
Morphological Characters ◽  
Data Support ◽  
Its Dna Sequences

Sequence data from the nuclear ribosomal internal transcribed spacer (ITS) region of 85 species (131 accessions) were used to determine the tribal limits, monophyly status, and phylogenetic intra-tribal relationships of genera within the tribe Alysseae (Brassicaceae). Both maximum parsimony and maximum likelihood analyses support the recognition of the tribe Alysseae s. str. (12 genera: Alyssoides , Alyssum , Aurinia , Berteroa , Bornmuellera , Clastopus , Clypeola , Degenia , Fibigia , Galitzkya , Hormathophylla , and Physoptychis ). Six well-supported clades were recognized within the Alysseae clade, including two Alyssum clades (one of which includes Clypeola ), an Alyssoides and allies clade (includes Alyssoides , Bornmuellera , Clastopus , Degenia , Fibigia , Hormathophylla , and Physoptychis ), a Berteroa and allies clade (includes Aurinia , Berteroa , and Galitzkya ), a Bornmuellera clade, and a Hormathophylla clade. Morphological and cytological support for these clades is reviewed. The ITS data support the exclusion of the following taxa from the Alysseae, with appropriate tribal assignment given in parentheses: Alyssum klimesii Al-Shehbaz (Camelineae), Asperuginoides (unresolved), Athysanus (Arabideae), Botschantzevia (Arabideae), Didymophysa (unresolved), Farsetia (Malcolmieae), Lobularia (Malcolmieae), and Ptilotrichum (Arabideae). Farsetia and Lobularia are inferred to be monophyletic, and based on molecular and morphological characters they are assigned to Malcolmieae, a recently described tribe.

A new species of Chlorociboria (Helotiales, Ascomycota) on herbaceous stems from China

Phytotaxa ◽  
2017 ◽  
Vol 312 (1) ◽  
pp. 111
Author(s):  
HUAN-DI ZHENG ◽  
WEN-YING ZHUANG
Keyword(s):  
New Species ◽  
Dna Sequences ◽  
Internal Transcribed Spacer ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Central China ◽  
Nuclear Ribosomal Dna ◽  
Light Blue ◽  
Ectal Excipulum ◽  
A New Species

A new species, namely Chlorociboria herbicola, is discovered on herbaceous stems in central China. Morphologically, the new fungus is distinctive by the combination of light blue-green apothecia, rectangular cells in ectal excipulum, and elongate-ellipsoidal ascospores with rounded ends. Phylogenetic analyses of the internal transcribed spacer and large subunit of nuclear ribosomal DNA sequences confirm its ascription in Chlorociboria and distinction from the known species of the genus.

scholarly journals First Report of Musk Thistle Rust (Puccinia carduorum) in California and Nevada

Plant Disease ◽  
2002 ◽  
Vol 86 (7) ◽  
pp. 814-814 ◽  
Author(s):  
D. M. Woods ◽  
M. J. Pitcairn ◽  
D. G. Luster ◽  
W. L. Bruckart
Keyword(s):  
Ribosomal Rna ◽  
Dna Sequences ◽  
Internal Transcribed Spacer ◽  
East Coast ◽  
Rust Fungus ◽  
The United States ◽  
Rust Disease ◽  
Carduus Nutans ◽  
Its1 And Its2 ◽  
Spacer Dna

Musk thistle, Carduus nutans L., is an introduced weed of pastures, rangelands, and natural areas in much of North America. Puccinia carduorum Jacky, an autoecious rust fungus from Turkey, has been evaluated for biological control of musk thistle since 1978, including a field study near Blacksburg, VA, from 1987 to 1990. After release of the fungus in Virginia, rusted musk thistle was found in eight eastern states by 1992, in Missouri by 1994 (1), and in Oklahoma by 1997 (2). A rust disease was discovered on musk thistle near Mt. Shasta, CA, on 22 September 1998, and near Mogul, NV, on 12 August 1999. The pathogen was identified as P. carduorum on the basis of pathogenicity on musk thistle and urediniospore morphology (ovate spores, 21 μm diameter, three germ pores equatorial in location, and echinulations over the upper two-thirds to three-quarters of urediniospores). Ribosomal RNA internal transcribed spacer DNA sequences (ITS1 and ITS2) were identical to those from the isolate obtained after the field release in Virginia, verifying that the California isolate is P. carduorum. The initial California infestation was observed on a few plants late in the season, and by September 2000, nearly 100% of plants were infected. The occurrence of P. carduorum in California is apparently the result of natural, unaided spread of the fungus on musk thistle from the East Coast of the United States. References: (1) A. B. A. M. Baudoin and W. L. Bruckart. Plant Dis. 80:1193, 1996. (2) L. J. Littlefield et al. Plant Dis. 82:832, 1998.

Paris variabilis (Melanthiaceae), a new species from southwestern China

Phytotaxa ◽  
2019 ◽  
Vol 401 (3) ◽  
pp. 190
Author(s):  
ZHENYAN YANG ◽  
CHENGJIN YANG ◽  
YUNHENG JI
Keyword(s):  
New Species ◽  
Dna Sequences ◽  
Phylogenetic Analyses ◽  
Southwestern China ◽  
New Taxon ◽  
Phylogenetic Placement ◽  
Greenish Yellow ◽  
The Status ◽  
Its Dna Sequences ◽  
A New Species

Paris variabilis, a new species from the Wumengshan Mountains, southwestern China, is described and illustrated. The new species is placed in Paris section Euthyra. The new taxon was determined to be most morphologically similar to P. vietnamensis but differs in its oblong leaf blades with an acute apex, stamens 2–4 × petal number, greenish yellow filaments and an enlarged, purplish red style base. The phylogenetic placement of this species was assessed based on nuclear ribosomal ITS DNA sequences data. The results of morphological and phylogenetic analyses support the status of the taxon as a new species.

scholarly journals Begonia difformis comb. & stat. nov. (Sect. Platycentrum, Begoniaceae), a new species segregated from B. palmata D. Don

Phytotaxa ◽  
2015 ◽  
Vol 227 (1) ◽  
pp. 83 ◽  
Author(s):  
Wai-Chao Leong ◽  
Tao Deng ◽  
Hang Sun ◽  
Ching-I Peng ◽  
Kuo-Fang Chung
Keyword(s):  
New Species ◽  
Morphological Variation ◽  
Dna Sequences ◽  
Phylogenetic Analyses ◽  
Mountain Areas ◽  
The Status ◽  
Variable Species ◽  
Its Dna Sequences ◽  
A New Species

Begonia palmata D. Don is one of the most widely distributed and morphologically variable species of Asian Begoniaceae. Examinations of its morphological variation indicate that two of its seven varieties, B. palmata var. difformis and B. palmata var. crassisetulosa, both distributed in the Gaoligong Mountain areas of Yunnan, China are indistinguishable and yet distinct from other varieties. Phylogenetic analyses using ITS DNA sequences further reveals that samples identifiable to these two varieties are also distantly related to samples of typical B. palmata. Based on these observations, we combine and elevate these two varieties to the status of species, Begonia difformis (Irmsch.) W.C. Leong, C.I Peng & K.F Chung, comb. & stat. nov..

Pseudohydnum brunneiceps (Auriculariales, Basidiomycota), a new species from Central China

Phytotaxa ◽  
2020 ◽  
Vol 441 (1) ◽  
pp. 87-94
Author(s):  
YAN-LIU CHEN ◽  
MING-SHENG SU ◽  
LIN-PING ZHANG ◽  
QIN ZOU ◽  
FEI WU ◽  
...  
Keyword(s):  
New Species ◽  
Molecular Phylogeny ◽  
Dna Sequences ◽  
Internal Transcribed Spacer ◽  
Phylogenetic Analyses ◽  
Central China ◽  
Jiangxi Province ◽  
Line Drawings ◽  
A New Species ◽  
Representative Samples

Pseudohydnum brunneiceps is described as a new species from Jiangxi Province, central China. Morphologically, it is characterized by a gelatinous basidiocarps, pilei pale yellowish brown, dark reddish brown to blackish velutinate, spines conical and white, and basidiospores globose to broadly ellipsoidal. Phylogenetic analyses of DNA sequences from partial 28S region and internal transcribed spacer (ITS) also confirm that P. brunneiceps forms an independent lineage within Pseudohydnum. A description, photographs of the fresh basidiomata and line-drawings of the microstructures are provided. In addition, the previous records of P. gelatinosum in China should be re-evaluated by more representative samples by molecular phylogeny.

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