scholarly journals The complete mitogenome and plastome of the haptophyte Pavlova lutheri NIVA-4/92

2020 ◽  
Vol 5 (3) ◽  
pp. 2748-2749
Author(s):  
Chris J. Hulatt ◽  
René H. Wijffels ◽  
Kiron Viswanath ◽  
Matthew C. Posewitz
Keyword(s):  
Pavlova Lutheri ◽  
Complete Mitogenome

scholarly journals The complete mitogenome and phylogenetic analysis of Indian driftfish, Cubiceps squamiceps (Scombriformes: Nomeidae)

2021 ◽  
Vol 6 (5) ◽  
pp. 1606-1607
Author(s):  
Ying Peng ◽  
Jiasheng Li ◽  
Kun Zhang ◽  
Yifan Liu ◽  
Hongqiang Wang ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Complete Mitogenome

scholarly journals Novel gene rearrangement in the mitochondrial genome of Muraenesox cinereus and the phylogenetic relationship of Anguilliformes

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Kun Zhang ◽  
Kehua Zhu ◽  
Yifan Liu ◽  
Hua Zhang ◽  
Li Gong ◽  
...  
Keyword(s):  
Mitochondrial Genome ◽  
Gene Rearrangement ◽  
Tandem Duplication ◽  
Mitochondrial Gene ◽  
Gene Arrangement ◽  
Protein Coding ◽  
Muraenesox Cinereus ◽  
Complete Mitogenome ◽  
Relationship Of ◽  
Rna Genes

AbstractThe structure and gene sequence of the fish mitochondrial genome are generally considered to be conservative. However, two types of gene arrangements are found in the mitochondrial genome of Anguilliformes. In this paper, we report a complete mitogenome of Muraenesox cinereus (Anguilliformes: Muraenesocidae) with rearrangement phenomenon. The total length of the M. cinereus mitogenome was 17,673 bp, and it contained 13 protein-coding genes, two ribosomal RNAs, 22 transfer RNA genes, and two identical control regions (CRs). The mitochondrial genome of M. cinereus was obviously rearranged compared with the mitochondria of typical vertebrates. The genes ND6 and the conjoint trnE were translocated to the location between trnT and trnP, and one of the duplicated CR was translocated to the upstream of the ND6. The tandem duplication and random loss is most suitable for explaining this mitochondrial gene rearrangement. The Anguilliformes phylogenetic tree constructed based on the whole mitochondrial genome well supports Congridae non-monophyly. These results provide a basis for the future Anguilliformes mitochondrial gene arrangement characteristics and further phylogenetic research.

scholarly journals The complete mitogenome sequence of the hawk moth, Theretra latreillii subsp. lucasii (Lepidoptera: Sphingidae) from Zhejiang Province, China

2021 ◽  
Vol 6 (7) ◽  
pp. 1880-1882
Author(s):  
Qiaoying Lu ◽  
Hongwei Yao ◽  
Jinming Zhang ◽  
Hongxing Xu ◽  
Caiying Jiang
Keyword(s):  
Zhejiang Province ◽  
Hawk Moth ◽  
Mitogenome Sequence ◽  
Complete Mitogenome

The complete mitogenome of the turnip moth Agrotis segetum (Lepidoptera: Noctuidae)

2013 ◽  
Vol 25 (5) ◽  
pp. 345-347 ◽  
Author(s):  
Qiu-Ling Wu ◽  
Wen-Xia Cui ◽  
Bao-Zhen Du ◽  
Yun Gu ◽  
Shu-Jun Wei
Keyword(s):  
Agrotis Segetum ◽  
Turnip Moth ◽  
Complete Mitogenome ◽  
Lepidoptera Noctuidae

scholarly journals Complete mitogenome mapping of potato late blight pathogen, Phytophthora infestans A2 mating type

2017 ◽  
Vol 2 (1) ◽  
pp. 90-91
Author(s):  
Virupaksh U. Patil ◽  
G. Vanishree ◽  
Debasis Pattanayak ◽  
Sanjeev Sharma ◽  
Vinay Bhardwaj ◽  
...  
Keyword(s):  
Late Blight ◽  
Phytophthora Infestans ◽  
Mating Type ◽  
Potato Late Blight ◽  
Complete Mitogenome ◽  
Late Blight Pathogen

scholarly journals Evolutionary Relations of Hexanchiformes Deep-Sea Sharks Elucidated by Whole Mitochondrial Genome Sequences

2013 ◽  
Vol 2013 ◽  
pp. 1-11 ◽  
Author(s):  
Keiko Tanaka ◽  
Takashi Shiina ◽  
Taketeru Tomita ◽  
Shingo Suzuki ◽  
Kazuyoshi Hosomichi ◽  
...  
Keyword(s):  
Genetic Relationships ◽  
Close Relation ◽  
Rrna Genes ◽  
Gill Slit ◽  
Mtdna Sequences ◽  
Protein Coding ◽  
Bayesian Phylogenetic Analysis ◽  
Extant Species ◽  
Complete Mitogenome ◽  
Cartilaginous Fishes

Hexanchiformes is regarded as a monophyletic taxon, but the morphological and genetic relationships between the five extant species within the order are still uncertain. In this study, we determined the whole mitochondrial DNA (mtDNA) sequences of seven sharks including representatives of the five Hexanchiformes, one squaliform, and one carcharhiniform and inferred the phylogenetic relationships among those species and 12 other Chondrichthyes (cartilaginous fishes) species for which the complete mitogenome is available. The monophyly of Hexanchiformes and its close relation with all other Squaliformes sharks were strongly supported by likelihood and Bayesian phylogenetic analysis of 13,749 aligned nucleotides of 13 protein coding genes and two rRNA genes that were derived from the whole mDNA sequences of the 19 species. The phylogeny suggested that Hexanchiformes is in the superorder Squalomorphi,Chlamydoselachus anguineus(frilled shark) is the sister species to all other Hexanchiformes, and the relations within Hexanchiformes are well resolved asChlamydoselachus, (Notorynchus, (Heptranchias, (Hexanchus griseus,H. nakamurai))). Based on our phylogeny, we discussed evolutionary scenarios of the jaw suspension mechanism and gill slit numbers that are significant features in the sharks.

scholarly journals The complete mitochondrial genome of the intertidal spider (Desis jiaxiangi) provides novel insights into the adaptive evolution of the mitogenome and the evolution of spiders

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Fan Li ◽  
Yunyun Lv ◽  
Zhengyong Wen ◽  
Chao Bian ◽  
Xinhui Zhang ◽  
...  
Keyword(s):  
Positive Selection ◽  
Adaptive Evolution ◽  
Physiological Activity ◽  
Complete Mitochondrial Genome ◽  
Dynamic Environment ◽  
Data Set ◽  
History Of ◽  
Complete Mitogenome ◽  
Selection Signal ◽  
Positive Selection Signal

Abstract Background Although almost all extant spider species live in terrestrial environments, a few species live fully submerged in freshwater or seawater. The intertidal spiders (genus Desis) built silk nests within coral crevices can survive submerged in high tides. The diving bell spider, Argyroneta aquatica, resides in a similar dynamic environment but exclusively in freshwater. Given the pivotal role played by mitochondria in supplying most energy for physiological activity via oxidative phosphorylation and the environment, herein we sequenced the complete mitogenome of Desis jiaxiangi to investigate the adaptive evolution of the aquatic spider mitogenomes and the evolution of spiders. Results We assembled a complete mitogenome of the intertidal spider Desis jiaxiangi and performed comparative mitochondrial analyses of data set comprising of Desis jiaxiangi and other 45 previously published spider mitogenome sequences, including that of Argyroneta aquatica. We found a unique transposition of trnL2 and trnN genes in Desis jiaxiangi. Our robust phylogenetic topology clearly deciphered the evolutionary relationships between Desis jiaxiangi and Argyroneta aquatica as well as other spiders. We dated the divergence of Desis jiaxiangi and Argyroneta aquatica to the late Cretaceous at ~ 98 Ma. Our selection analyses detected a positive selection signal in the nd4 gene of the aquatic branch comprising both Desis jiaxiangi and Argyroneta aquatica. Surprisingly, Pirata subpiraticus, Hypochilus thorelli, and Argyroneta aquatica each had a higher Ka/Ks value in the 13 PCGs dataset among 46 taxa with complete mitogenomes, and these three species also showed positive selection signal in the nd6 gene. Conclusions Our finding of the unique transposition of trnL2 and trnN genes indicates that these genes may have experienced rearrangements in the history of intertidal spider evolution. The positive selection signals in the nd4 and nd6 genes might enable a better understanding of the spider metabolic adaptations in relation to different environments. Our construction of a novel mitogenome for the intertidal spider thus sheds light on the evolutionary history of spiders and their mitogenomes.

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