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A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae
Nucleic Acids Research
◽
10.1093/nar/gks804
◽
2012
◽
Vol 40
(20)
◽
pp. 10084-10097
◽
Cited By ~ 206
Author(s):
Intawat Nookaew
◽
Marta Papini
◽
Natapol Pornputtapong
◽
Gionata Scalcinati
◽
Linn Fagerberg
◽
...
Keyword(s):
Gene Expression
◽
Saccharomyces Cerevisiae
◽
Differential Gene Expression
◽
Transcriptome Analysis
◽
Rna Seq
◽
Comprehensive Comparison
◽
Differential Gene
Download Full-text
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Differential gene expression between the vigorous and dwarf litchi cultivars based on RNA-Seq transcriptome analysis
PLoS ONE
◽
10.1371/journal.pone.0208771
◽
2018
◽
Vol 13
(12)
◽
pp. e0208771
Author(s):
Fuchu Hu
◽
Zhe Chen
◽
Jietang Zhao
◽
Xianghe Wang
◽
Wenbing Su
◽
...
Keyword(s):
Gene Expression
◽
Differential Gene Expression
◽
Transcriptome Analysis
◽
Rna Seq
◽
Differential Gene
Download Full-text
Faculty Opinions recommendation of Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression.
Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
◽
10.3410/f.717971189.793469500
◽
2013
◽
Author(s):
Stephen Turner
Keyword(s):
Gene Expression
◽
Differential Gene Expression
◽
Rna Seq
◽
Web Tool
◽
Differential Gene
Download Full-text
Transcriptome analysis reveals differential gene expression associated with white spot syndrome virus resistance in the shrimp Litopenaeus vannamei fed on functional diets
Aquaculture
◽
10.1016/j.aquaculture.2021.737434
◽
2022
◽
Vol 547
◽
pp. 737434
Author(s):
Monica Janeth Cabrera-Stevens
◽
Arturo Sánchez-Paz
◽
Fernando Mendoza-Cano
◽
Cristina Escobedo-Fregoso
◽
Trinidad Encinas-García
◽
...
Keyword(s):
Gene Expression
◽
Differential Gene Expression
◽
Transcriptome Analysis
◽
Litopenaeus Vannamei
◽
Virus Resistance
◽
White Spot Syndrome Virus
◽
White Spot
◽
Differential Gene
◽
White Spot Syndrome
Download Full-text
Comparative transcriptome analysis reveals differential gene expression in sterile and fertile rubber tree varieties during flower bud differentiation
Journal of Plant Physiology
◽
10.1016/j.jplph.2021.153506
◽
2021
◽
pp. 153506
Author(s):
Fei Li
◽
Ying Wang
◽
Heqiong Gao
◽
Xiaofei Zhang
◽
Nansheng Zhuang
Keyword(s):
Gene Expression
◽
Differential Gene Expression
◽
Transcriptome Analysis
◽
Rubber Tree
◽
Comparative Transcriptome
◽
Flower Bud
◽
Comparative Transcriptome Analysis
◽
Differential Gene
◽
Flower Bud Differentiation
Download Full-text
Differential Gene Expression by RNA-Seq Analysis of the Primo Vessel in the Rabbit Lymph
Journal of Acupuncture and Meridian Studies
◽
10.1016/j.jams.2018.10.008
◽
2019
◽
Vol 12
(1)
◽
pp. 11-19
◽
Cited By ~ 1
Author(s):
Jun-Young Shin
◽
Sang-Heon Choi
◽
Da-Woon Choi
◽
Ye-Jin An
◽
Jae-Hyuk Seo
◽
...
Keyword(s):
Gene Expression
◽
Differential Gene Expression
◽
Rna Seq
◽
Differential Gene
Download Full-text
A Unified Model for Joint Normalization and Differential Gene Expression Detection in RNA-Seq Data
IEEE/ACM Transactions on Computational Biology and Bioinformatics
◽
10.1109/tcbb.2018.2790918
◽
2019
◽
Vol 16
(2)
◽
pp. 442-454
◽
Cited By ~ 5
Author(s):
Kefei Liu
◽
Jieping Ye
◽
Yang Yang
◽
Li Shen
◽
Hui Jiang
Keyword(s):
Gene Expression
◽
Differential Gene Expression
◽
Unified Model
◽
Rna Seq
◽
Differential Gene
Download Full-text
Transcriptome analysis reveals differential gene expression in Lateolabrax maculatus following waterborne Zn exposure
Aquaculture Reports
◽
10.1016/j.aqrep.2019.100229
◽
2019
◽
Vol 15
◽
pp. 100229
◽
Cited By ~ 1
Author(s):
Chuanpeng Zhou
◽
Heizhao Lin
◽
Zhong Huang
◽
Jun Wang
◽
Yun Wang
◽
...
Keyword(s):
Gene Expression
◽
Differential Gene Expression
◽
Transcriptome Analysis
◽
Lateolabrax Maculatus
◽
Differential Gene
Download Full-text
Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data
Genome Biology
◽
10.1186/gb-2013-14-9-r95
◽
2013
◽
Vol 14
(9)
◽
pp. R95
◽
Cited By ~ 408
Author(s):
Franck Rapaport
◽
Raya Khanin
◽
Yupu Liang
◽
Mono Pirun
◽
Azra Krek
◽
...
Keyword(s):
Gene Expression
◽
Differential Gene Expression
◽
Expression Analysis
◽
Gene Expression Analysis
◽
Comprehensive Evaluation
◽
Rna Seq
◽
Differential Gene Expression Analysis
◽
Analysis Methods
◽
Differential Gene
Download Full-text
Identification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seq
Frontiers in Plant Science
◽
10.3389/fpls.2016.01044
◽
2016
◽
Vol 7
◽
Cited By ~ 44
Author(s):
Wei Chen
◽
Qiuming Yao
◽
Gunvant B. Patil
◽
Gaurav Agarwal
◽
Rupesh K. Deshmukh
◽
...
Keyword(s):
Gene Expression
◽
Comparative Analysis
◽
Differential Gene Expression
◽
Leaf Tissue
◽
Rna Seq
◽
Flooding Stress
◽
Soybean Leaf
◽
Differential Gene
Download Full-text
Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensivein silicoassessment of RNA-seq experiments
Molecular Ecology
◽
10.1111/mec.12014
◽
2012
◽
Vol 22
(3)
◽
pp. 620-634
◽
Cited By ~ 167
Author(s):
Nagarjun Vijay
◽
Jelmer W. Poelstra
◽
Axel Künstner
◽
Jochen B. W. Wolf
Keyword(s):
Gene Expression
◽
Differential Gene Expression
◽
Transcriptome Assembly
◽
Rna Seq
◽
Gene Expression Quantification
◽
Differential Gene
◽
Expression Quantification
◽
Challenges And Strategies
Download Full-text
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