Assessment

Author(s):  
Mary Jane West-Eberhard

A book on developmental plasticity needs a chapter on assessment, if only to show that adaptive environmental assessment occurs. Skepticism regarding the ability of nonhuman organisms to assess conditions well enough to make adaptive decisions has a long history in evolutionary biology, and it has been an important barrier to understanding the evolution of adaptive developmental plasticity. It is worth briefly reviewing this history in order to understand certain preconceptions about assessment that still persist. In the nineteenth century, critics of Darwin’s theory of sexual selection (Darwin, 1871) balked at the idea of an “aesthetic sense” in lowly creatures that would enable female choice of mates (representative papers are reprinted and discussed in Bajema, 1984). Later, the barrier persisted for other reasons. Even though naturalists routinely used the condition-appropriate expression of phenotypic traits to support adaptation hypotheses—a practice that assumes adaptive assessment of conditions as it is defined here—theoretically inclined biologists paid little attention to the question of facultatively expressed traits. Part of the difficulty lay in the problem of explaining how adaptive assessment could evolve within the framework of conventional genetics. Theodosius Dobzhansky, one of the twentieth century’s leading evolutionary biologists, acknowledged this unresolved problem in remarks following a lecture by J. S. Kennedy on the phase polyphenisms of migratory locusts (Kennedy, 1961). Dobzhansky referred to the “challenge to a geneticist” of explaining the adaptive switch between the sedentary and the migratory phenotypes of the locusts, which had been shown to be largely independent of genotype. He suggested that an extrachromosomal factor may be involved, a symbiotic microorganism that acts as a “plasmagene” whose multiplication would eventually stimulate phase change. Although Dobzhansky’s proposal was no more preposterous than some of the regulatory devices that have actually been discovered, Kennedy (1961) minced no words in his reply to this suggestion: . . . [W]e need not feel obliged to invoke a second organism to explain [phase polymorphism] unless we are reluctant to concede an important part to the environment as well as to heredity in moulding development. . . .

Author(s):  
Mary Jane West-Eberhard

The first comprehensive synthesis on development and evolution: it applies to all aspects of development, at all levels of organization and in all organisms, taking advantage of modern findings on behavior, genetics, endocrinology, molecular biology, evolutionary theory and phylogenetics to show the connections between developmental mechanisms and evolutionary change. This book solves key problems that have impeded a definitive synthesis in the past. It uses new concepts and specific examples to show how to relate environmentally sensitive development to the genetic theory of adaptive evolution and to explain major patterns of change. In this book development includes not only embryology and the ontogeny of morphology, sometimes portrayed inadequately as governed by "regulatory genes," but also behavioral development and physiological adaptation, where plasticity is mediated by genetically complex mechanisms like hormones and learning. The book shows how the universal qualities of phenotypes--modular organization and plasticity--facilitate both integration and change. Here you will learn why it is wrong to describe organisms as genetically programmed; why environmental induction is likely to be more important in evolution than random mutation; and why it is crucial to consider both selection and developmental mechanism in explanations of adaptive evolution. This book satisfies the need for a truly general book on development, plasticity and evolution that applies to living organisms in all of their life stages and environments. Using an immense compendium of examples on many kinds of organisms, from viruses and bacteria to higher plants and animals, it shows how the phenotype is reorganized during evolution to produce novelties, and how alternative phenotypes occupy a pivotal role as a phase of evolution that fosters diversification and speeds change. The arguments of this book call for a new view of the major themes of evolutionary biology, as shown in chapters on gradualism, homology, environmental induction, speciation, radiation, macroevolution, punctuation, and the maintenance of sex. No other treatment of development and evolution since Darwin's offers such a comprehensive and critical discussion of the relevant issues. Developmental Plasticity and Evolution is designed for biologists interested in the development and evolution of behavior, life-history patterns, ecology, physiology, morphology and speciation. It will also appeal to evolutionary paleontologists, anthropologists, psychologists, and teachers of general biology.


Author(s):  
Maren N. Vitousek ◽  
Laura A. Schoenle

Hormones mediate the expression of life history traits—phenotypic traits that contribute to lifetime fitness (i.e., reproductive timing, growth rate, number and size of offspring). The endocrine system shapes phenotype by organizing tissues during developmental periods and by activating changes in behavior, physiology, and morphology in response to varying physical and social environments. Because hormones can simultaneously regulate many traits (hormonal pleiotropy), they are important mediators of life history trade-offs among growth, reproduction, and survival. This chapter reviews the role of hormones in shaping life histories with an emphasis on developmental plasticity and reversible flexibility in endocrine and life history traits. It also discusses the advantages of studying hormone–behavior interactions from an evolutionary perspective. Recent research in evolutionary endocrinology has provided insight into the heritability of endocrine traits, how selection on hormone systems may influence the evolution of life histories, and the role of hormonal pleiotropy in driving or constraining evolution.


2019 ◽  
Vol 19 (1) ◽  
Author(s):  
Gabriele Sansalone ◽  
Paolo Colangelo ◽  
Anna Loy ◽  
Pasquale Raia ◽  
Stephen Wroe ◽  
...  

Abstract Background Understanding the mechanisms promoting or constraining morphological diversification within clades is a central topic in evolutionary biology. Ecological transitions are of particular interest because of their influence upon the selective forces and factors involved in phenotypic evolution. Here we focused on the humerus and mandibles of talpid moles to test whether the transition to the subterranean lifestyle impacted morphological disparity and phenotypic traits covariation between these two structures. Results Our results indicate non-subterranean species occupy a significantly larger portion of the talpid moles morphospace. However, there is no difference between subterranean and non-subterranean moles in terms of the strength and direction of phenotypic integration. Conclusions Our study shows that the transition to a subterranean lifestyle significantly reduced morphological variability in talpid moles. However, this reduced disparity was not accompanied by changes in the pattern of traits covariation between the humerus and the mandible, suggesting the presence of strong phylogenetic conservatism within this pattern.


Author(s):  
Ainash Childebayeva ◽  
Jaclyn M Goodrich ◽  
Fabiola Leon-Velarde ◽  
Maria Rivera-Chira ◽  
Melisa Kiyamu ◽  
...  

Abstract High-altitude adaptation is a classic example of natural selection operating on the human genome. Physiological and genetic adaptations have been documented in populations with a history of living at high altitude. However, the role of epigenetic gene regulation, including DNA methylation, in high-altitude adaptation is not well understood. We performed an epigenome-wide DNA methylation association study based on whole blood from 113 Peruvian Quechua with differential lifetime exposures to high altitude (>2,500) and recruited based on a migrant study design. We identified two significant differentially methylated positions (DMPs) and 62 differentially methylated regions (DMRs) associated with high-altitude developmental and lifelong exposure statuses. DMPs and DMRs were found in genes associated with hypoxia-inducible factor pathway, red blood cell production, blood pressure, and others. DMPs and DMRs associated with fractional exhaled Nitric Oxide (FeNO) also were identified. We found a significant association between EPAS1 methylation and EPAS1 SNP genotypes, suggesting that local genetic variation influences patterns of methylation. Our findings demonstrate that DNA methylation is associated with early developmental and lifelong high-altitude exposures among Peruvian Quechua as well as altitude-adaptive phenotypes. Together these findings suggest that epigenetic mechanisms might be involved in adaptive developmental plasticity to high altitude. Moreover, we show that local genetic variation is associated with DNA methylation levels, suggesting that methylation associated SNPs could be a potential avenue for research on genetic adaptation to hypoxia in Andeans.


2019 ◽  
Vol 65 (3-4) ◽  
pp. 130-136 ◽  
Author(s):  
Facundo Xavier Palacio ◽  
Mariano Ordano ◽  
Santiago Benitez-Vieyra

The use of multiple regression analysis to quantify the regime and strength of natural selection in nature has been an influential approach in evolutionary biology over the last 36 years. However, many studies fail to report the protocol of estimation of selection coefficients (selection gradients) and the specific model assumptions, thus failing to verify and reproduce the estimation of selection coefficients. We present a brief overview of the Lande and Arnold’s approach and a step-by-step R routine to aid researchers to perform a verifiable and reproducible regression analysis of natural selection. The steps involved in the analysis include: (1) assessing collinearity between phenotypic traits, (2) testing normality of model residuals, and (3) testing multivariate normality of phenotypic traits. We also performed a series of simulations to test the effect of non-symmetrical (skewed) phenotypic traits on the estimation of linear selection gradients. These showed that the bias in the linear gradient increased with increased skewness in phenotypic traits for the quadratic model, whereas the linear gradient of a model with only linear terms was nearly independent of trait skewness. If none of the above assumptions are met, selection gradients need to be estimated from two separate equations, whereas standard errors must be computed using other methods (e.g. bootstrapping). We expect that the procedure outlined here and the availability of analytical codes motivate the verifiability and reproducibility of the Lande and Arnold’s approach in the study of microevolution.


Nature ◽  
2004 ◽  
Vol 431 (7006) ◽  
pp. 261-262 ◽  
Author(s):  
Fabien Aubret ◽  
Richard Shine ◽  
Xavier Bonnet

2016 ◽  
Author(s):  
Michael Kasumovic ◽  
Zhiliang Chen ◽  
Marc R Wilkins

Background: Ecological and evolutionary model organisms have provided extensive insight into the ecological triggers, adaptive benefits, and evolution of life-history driven developmental plasticity. Despite this, we still have a poor understanding of the underlying genetic changes that occur during shifts towards different developmental trajectories. The goal of this study is to determine whether we can identify underlying gene expression patterns that can describe the different life-history trajectories individuals follow in response to social cues of competition. To do this, we use the Australian black field cricket (Teleogryllus commodus), a species with sex-specific developmental trajectories moderated by the density and quality of calls heard during immaturity. In this study, we manipulated the social information males and females could hear by rearing individuals in either calling or silent treatments. We next used RNA-Seq to develop a reference transcriptome to study changes in brain gene expression at two points prior to sexual maturation. Results: We show accelerated development in both sexes when exposed to calling; changes were also seen in growth, lifespan, and reproductive effort. Functional relationships between genes and phenotypes were apparent from ontological enrichment analysis. We demonstrate that increased phenotypic expression was often associated with the expression of a greater number of genes with similar effect, thus providing a suite of candidate genes for future research in this and other invertebrate organisms. Conclusions: Our results provide interesting insight into the genomic underpinnings of developmental plasticity. We highlight the relationship between genes of known effect and behavioral and phenotypic traits that are under strong sexual selection in Teleogryllus commodus. We also demonstrate the variation in suites of genes associated with different developmental trajectories. Our results provide the opportunity for a genomic exploration of other evolutionary theories such as condition dependence and sexual conflict.


2018 ◽  
Author(s):  
Timothy B. Sackton ◽  
Phil Grayson ◽  
Alison Cloutier ◽  
Zhirui Hu ◽  
Jun S. Liu ◽  
...  

The relative roles of regulatory and protein evolution in the origin and loss of convergent phenotypic traits is a core question in evolutionary biology. Here we combine phylogenomic, epigenomic and developmental data to show that convergent evolution of regulatory regions, but not protein-coding genes, is associated with flightlessness in palaeognathous birds, a classic example of a convergent phenotype. Eleven new genomes, including a draft genome from an extinct moa, resolve palaeognath phylogeny and show that the incidence of independent, convergent accelerations among 284,000 conserved non-exonic elements is significantly more frequent in ratites than other bird lineages. Ratite-specific acceleration of conserved regions and measures of open chromatin across eight tissues in the developing chick identify candidate regulatory regions that may have modified or lost function in ratites. Enhancer activity assays conducted in the early developing chicken forelimb confirm that volant versions of a conserved element in the first intron of the TEAD1 gene display conserved enhancer activity, whereas an accelerated flightless version fails to drive reporter gene expression. Our results show that convergent molecular changes associated with loss of flight are largely regulatory in nature.


Behaviour ◽  
2015 ◽  
Vol 152 (10) ◽  
pp. 1307-1324 ◽  
Author(s):  
Cissy J. Ballen ◽  
Richard Shine ◽  
Mats M. Olsson

The thermal environment within a reptile nest can affect the phenotypic traits of hatchlings, and hence (potentially) their fitness. Research on this topic needs to measure phenotypic traits relevant to the species involved; and hence, studies on unusual species need to measure unusual traits. We investigated the effects of two incubation temperatures on the morphology and behaviour of hatchling veiled chameleons (Chamaeleo calyptratus). Colder-incubated eggs exhibited a longer incubation period, but produced larger faster-growing hatchlings. Incubation treatment also affected a chameleon’s activity level and its unique foraging tactics. Cold-incubated animals were more sedentary, caught prey faster, and extended their tongues farther to reach prey than did their warm-incubated counterparts. Thus, the fitness costs of low temperatures in the nest (slow development, and thus late hatching) may be offset by incubation-derived enhancements in hatchling growth rates and foraging abilities.


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