Steady-state kinetics

Author(s):  
Athel Cornish-Bowden

All of chemical kinetics is based on rate equations, but this is especially true of steady-state enzyme kinetics: in other applications a rate equation can be regarded as a differential equation that has to be integrated to give the function of real interest, whereas in steady-state enzyme kinetics it is used as it stands. Although the early enzymologists tried to follow the usual chemical practice of deriving equations that describe the state of reaction as a function of time there were too many complications, such as loss of enzyme activity, effects of accumulating product etc., for this to be a fruitful approach. Rapid progress only became possible when Michaelis and Menten (1) realized that most of the complications could be removed by extrapolating back to zero time and regarding the measured initial rate as the primary observation. Since then, of course, accumulating knowledge has made it possible to study time courses directly, and this has led to two additional subdisciplines of enzyme kinetics, transient-state kinetics, which deals with the time regime before a steady state is established, and progress-curve analysis, which deals with the slow approach to equilibrium during the steady-state phase. The former of these has achieved great importance but is regarded as more specialized. It is dealt with in later chapters of this book. Progress-curve analysis has never recovered the importance that it had at the beginning of the twentieth century. Nearly all steps that form parts of the mechanisms of enzyme-catalysed reactions involve reactions of a single molecule, in which case they typically follow first-order kinetics: . . . v = ka . . . . . . 1 . . . or they involve two molecules (usually but not necessarily different from one another) and typically follow second-order kinetics: . . . v = kab . . . . . . 2 . . . In both cases v represents the rate of reaction, and a and b are the concentrations of the molecules involved, and k is a rate constant. Because we shall be regarding the rate as a quantity in its own right it is not usual in steady-state kinetics to represent it as a derivative such as -da/dt.

1986 ◽  
Vol 235 (2) ◽  
pp. 613-615 ◽  
Author(s):  
R G Duggleby

Progress curves of enzyme-catalysed reactions are described by equations of a type that precludes direct calculation of the extent of reaction at any time. Previously, such equations have been solved by the Newton-Raphson method, but this procedure may fail when based upon the usual formulae. An alternative formulation is proposed that is both quicker and more robust.


1986 ◽  
Vol 155 (1) ◽  
pp. 38-44 ◽  
Author(s):  
Jamie I. Vandenberg ◽  
Philip W. Kuchel ◽  
Glenn K. King

1977 ◽  
Vol 163 (3) ◽  
pp. 633-634
Author(s):  
K J Indge

A criticism [Cornish-Bowden (1976) Biochem. J. 159, 167] of an algebraic method for deriving steady-state rate equations [Indge & Childs (1976) Biochem. J. 155, 567-570] is theoretically founded.


1991 ◽  
Vol 276 (1) ◽  
pp. 231-236 ◽  
Author(s):  
N V Torres ◽  
J Sicilia ◽  
E Meléndez-Hevia

In this paper we study the transitions between steady states in metabolic systems. In order to deal with this task we divided the total metabolite concentration at steady state, sigma, into two new fractions, delta (the Output Transition Time) and tau beta (Input Transition Time), which are related with the course of output and input mass to the system respectively. We show the equivalence time between these terms and the Total Transition Time, tau T, previously defined [Easterby (1986) Biochem. J. 233, 871-875]. Next, we define a new magnitude, the Output Passivity of a transition, rho, which quantifies a new aspect of the transition phase that we call the passivity of the output progress curve. With these magnitudes, all of them being experimentally accessible, several features of the transient state can be measured. We apply the present analysis to (a) the case of coupled enzyme assays, which allows us to reach conclusions about the progress curves in these particular transitions and the equivalence between tau sigma and tau delta, and (b) some experimental results that allow us to discuss the biological significance of the Output Passivity in the transition between steady states in metabolic systems.


2017 ◽  
Author(s):  
Rajamanickam Murugan

AbstractAnalytical solution to the Michaelis-Menten (MM) rate equations for single-substrate enzyme catalysed reaction is not known. Here we introduce an effective scaling scheme and identify the critical parameters which can completely characterize the entire dynamics of single substrate MM enzymes. Using this scaling framework, we reformulate the differential rate equations of MM enzymes over velocity-substrate, velocity-product, substrate-product and velocity-substrate-product spaces and obtain various approximations for both pre- and post-steady state dynamical regimes. Using this framework, under certain limiting conditions we successfully compute the timescales corresponding to steady state, pre- and post-steady states and also compute the approximate steady state values of velocity, substrate and product. We further define the dynamical efficiency of MM enzymes as the ratio between the reaction path length in the velocity-substrate-product space and the average reaction time required to convert the entire substrate into product. Here dynamical efficiency characterizes the phase-space dynamics and it would tell us how fast an enzyme can clear a harmful substrate from the environment. We finally perform a detailed error level analysis over various pre- and post-steady state approximations along with the already existing quasi steady state approximations and progress curve models and discuss the positive and negative points corresponding to various steady state and progress curve models.


1984 ◽  
Vol 223 (2) ◽  
pp. 551-553 ◽  
Author(s):  
D G Herries

A FORTRAN 77 program is described for the derivation of steady-state rate equations for enzyme kinetics. Input is very simple and consists of the two enzyme forms and the two rate constants for each step in the mechanism. The program may be run interactively or off-line. The results are produced after collecting together the algebraic coefficients of like concentration terms, taking account of sign. A fully interactive BASIC version running on a BBC Microcomputer is also available. Details of the programs have been deposited as Supplementary Publication SUP 50126 (45 pages) with the British Library Lending Division, Boston Spa, Wetherby, West Yorkshire LS23 7BQ, U.K., from whom copies may be obtained as indicated in Biochem. J. (1984) 217, 5.


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