scholarly journals RNA‐Seq identifies novel alternative transcripts of cytochrome P450s in human hepatocytes

2012 ◽  
Vol 26 (S1) ◽  
Author(s):  
Dan Li ◽  
Lai Peng ◽  
In-Hee Lee ◽  
Jennifer Li ◽  
Mahesh Visvanathan ◽  
...  
2014 ◽  
Vol 14 (1) ◽  
pp. 169 ◽  
Author(s):  
Lei Wang ◽  
Chenlong Cao ◽  
Qibin Ma ◽  
Qiaoying Zeng ◽  
Haifeng Wang ◽  
...  

Genomics ◽  
2019 ◽  
Vol 111 (6) ◽  
pp. 1853-1861 ◽  
Author(s):  
Ayslan C. Brant ◽  
Albert N. Menezes ◽  
Shayany P. Felix ◽  
Liz M. de Almeida ◽  
Michael Sammeth ◽  
...  

Xenobiotica ◽  
2018 ◽  
Vol 49 (6) ◽  
pp. 678-687 ◽  
Author(s):  
Shotaro Uehara ◽  
Yuichiro Higuchi ◽  
Nao Yoneda ◽  
Hiroshi Yamazaki ◽  
Hiroshi Suemizu

2007 ◽  
Vol 22 (4) ◽  
pp. 276-286 ◽  
Author(s):  
Koki Kojima ◽  
Kiyoshi Nagata ◽  
Tsutomu Matsubara ◽  
Yasushi Yamazoe

Pharmaceutics ◽  
2020 ◽  
Vol 12 (3) ◽  
pp. 220
Author(s):  
Won-Gu Choi ◽  
Ria Park ◽  
Dong Kyun Kim ◽  
Yongho Shin ◽  
Yong-Yeon Cho ◽  
...  

Mertansine, a tubulin inhibitor, is used as the cytotoxic component of antibody–drug conjugates (ADCs) for cancer therapy. The effects of mertansine on uridine 5′-diphospho-glucuronosyltransferase (UGT) activities in human liver microsomes and its effects on the mRNA expression of cytochrome P450s (CYPs) and UGTs in human hepatocytes were evaluated to assess the potential for drug–drug interactions (DDIs). Mertansine potently inhibited UGT1A1-catalyzed SN-38 glucuronidation, UGT1A3-catalyzed chenodeoxycholic acid 24-acyl-β-glucuronidation, and UGT1A4-catalyzed trifluoperazine N-β-d-glucuronidation, with Ki values of 13.5 µM, 4.3 µM, and 21.2 µM, respectively, but no inhibition of UGT1A6, UGT1A9, and UGT2B7 enzyme activities was observed in human liver microsomes. A 48 h treatment of mertansine (1.25–2500 nM) in human hepatocytes resulted in the dose-dependent suppression of mRNA levels of CYP1A2, CYP2B6, CYP3A4, CYP2C8, CYP2C9, CYP2C19, UGT1A1, and UGT1A9, with IC50 values of 93.7 ± 109.1, 36.8 ± 18.3, 160.6 ± 167.4, 32.1 ± 14.9, 578.4 ± 452.0, 539.5 ± 233.4, 856.7 ± 781.9, and 54.1 ± 29.1 nM, respectively, and decreased the activities of CYP1A2-mediated phenacetin O-deethylase, CYP2B6-mediated bupropion hydroxylase, and CYP3A4-mediated midazolam 1′-hydroxylase. These in vitro DDI potentials of mertansine with CYP1A2, CYP2B6, CYP2C8/9/19, CYP3A4, UGT1A1, and UGT1A9 substrates suggest that it is necessary to carefully characterize the DDI potentials of ADC candidates with mertansine as a payload in the clinic.


PLoS ONE ◽  
2020 ◽  
Vol 15 (12) ◽  
pp. e0242986
Author(s):  
Wissem Mhiri ◽  
Merve Ceylan ◽  
Neslihan Turgut-Kara ◽  
Barbaros Nalbantoğlu ◽  
Özgür Çakır

Cycloastragenol (CAG), a molecule isolated from ‘Astragalus membranaceus’, stimulates the telomerase activity and cell proliferation significantly. It has been proven that CAG has the ability to prevent some diseases in humans. In this study, we aimed to figure out the CAG effects on the different signaling mechanisms in plants and to broadly analyze the genome-wide transcriptional responses in order to demonstrate CAG as a new key molecule that can potentially help plants to overcome different environmental stresses. RNA-seq strategy was employed to assess the transcriptional profiles in A. thaliana calli. Our work primarily focused on an overall study on the transcriptomic responses of A. thaliana to CAG. A total of 22593 unigenes have been detected, among which 1045 unigenes associated with 213 GO terms were differentially expressed and were assigned to 118 KEGG pathways. The up-regulated genes are principally involved in cellular and metabolic processes in addition to the response to a stimulus. The data analysis revealed genes associated with defense signaling pathways such as cytochrome P450s transporter, antioxidant system genes, and stress-responsive protein families were significantly upregulated. The obtained results can potentially help in better understanding biotic and/or abiotic tolerance mechanisms in response to CAG.


2014 ◽  
Vol 211 (4) ◽  
pp. 412.e1-412.e6 ◽  
Author(s):  
Yang Zhao ◽  
Ali Mohamed Alshabi ◽  
Steve Caritis ◽  
Raman Venkataramanan

2020 ◽  
Author(s):  
Andrew J Olson ◽  
Doreen Ware

Genome sequencing projects annotate protein-coding gene models with multiple transcripts, aiming to represent all of the available transcript evidence. However, downstream analyses often operate on only one representative transcript per gene locus, sometimes known as the canonical transcript. To choose canonical transcripts, TRaCE (Transcript Ranking and Canonical Election) holds an 'election' in which a set of RNA-seq samples rank transcripts by annotation edit distance. These sample-specific votes are tallied along with other criteria such as protein length and InterPro domain coverage. The winner is selected as the canonical transcript, but the election proceeds through multiple rounds of voting to order all the transcripts by relevance. Based on the set of expression data provided, TRaCE can identify the most common isoforms from a broad expression atlas or prioritize alternative transcripts expressed in specific contexts.


2011 ◽  
Vol 35 (3) ◽  
pp. 241-250 ◽  
Author(s):  
Imen Ayed-Boussema ◽  
Jean Marc Pascussi ◽  
Karima Rjiba ◽  
Patrick Maurel ◽  
Hassen Bacha ◽  
...  

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