Multiple CTCF sites cooperate with each other to maintain a TAD for enhancer–promoter interaction in the β‐globin locus

2021 ◽  
Vol 35 (8) ◽  
Author(s):  
Jin Kang ◽  
Yea Woon Kim ◽  
Seongwon Park ◽  
Yujin Kang ◽  
AeRi Kim
Keyword(s):  
2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Tinnakorn Saelee ◽  
Poonnapa Limsoonthakul ◽  
Phakaorn Aphichoksiri ◽  
Meena Rittiruam ◽  
Mongkol Lerdpongsiripaisarn ◽  
...  

AbstractBiodiesel is of high interest due to increased demand for energy with the concern regarding more sustainable production processes. However, an inevitable by-product is glycerol. Hence, the conversion of this by-product to higher-value chemicals, especially 1,3-propanediol (1,3-PDO) via glycerol hydrogenolysis reaction, is one of the most effective pathways towards a profitable process. In general, this process is catalyzed by a highly active Pt-based catalyst supported on γ-Al2O3. However, its low 1,3-PDO selectivity and stability due to surface deactivation of such catalysts remained. This led to the surface modification by WOx to improve both the selectivity by means of the increased Brønsted acidity and the stability in terms of Pt leaching-resistance. Hence, we applied experimental and density functional theory (DFT)-based techniques to study the fundamentals of how WOx modified the catalytic performance in the Pt/γ-Al2O3 catalyst and provided design guidelines. The effects of WOx promoter on improved activity were due to the shifting of the total density of states towards the antibonding region evident by the total density of states (TDOS) profile. On the improved 1,3-PDO selectivity, the main reason was the increasing number of Brønsted acid sites due to the added WOx promoter. Interestingly, the stability improvement was due to the strong metal-support interaction (SMSI) that occurred in the catalyst, like typical high leaching-resistant catalysts. Also, the observed strong metal-support-promoter interaction (SMSPI) is an additional effect preventing leaching. The SMSPI stemmed from additional bonding between the WOx species and the Pt active site, which significantly strengthened Pt adsorption to support and a high electron transfer from both Pt and Al2O3 to WOx promoter. This suggested that the promising promoter for our reaction performed in the liquid phase would improve the stability if SMSI occurred, where the special case of the WOx promoter would even highly improve the stability through SMSPI. Nevertheless, various promoters that can promote SMSPI need investigations.


2018 ◽  
Vol 178 (4) ◽  
pp. 1631-1642 ◽  
Author(s):  
Shuaibin Zhang ◽  
Zhicheng Jiao ◽  
Lei Liu ◽  
Ketao Wang ◽  
Deyi Zhong ◽  
...  
Keyword(s):  

2019 ◽  
Vol 131 (26) ◽  
pp. 8688-8688
Author(s):  
Xing Huang ◽  
Detre Teschner ◽  
Maria Dimitrakopoulou ◽  
Alexey Fedorov ◽  
Benjamin Frank ◽  
...  

2020 ◽  
Vol 52 (5) ◽  
pp. 505-515 ◽  
Author(s):  
Johanna Fitz ◽  
Tobias Neumann ◽  
Monika Steininger ◽  
Eva-Maria Wiedemann ◽  
Adriana Cantoran Garcia ◽  
...  
Keyword(s):  

2020 ◽  
Vol 48 (19) ◽  
pp. 10632-10647
Author(s):  
Yuliang Feng ◽  
Siim Pauklin

Abstract Cancer development and progression are demarcated by transcriptional dysregulation, which is largely attributed to aberrant chromatin architecture. Recent transformative technologies have enabled researchers to examine the genome organization at an unprecedented dimension and precision. In particular, increasing evidence supports the essential roles of 3D chromatin architecture in transcriptional homeostasis and proposes its alterations as prominent causes of human cancer. In this article, we will discuss the recent findings on enhancers, enhancer–promoter interaction, chromatin topology, phase separation and explore their potential mechanisms in shaping transcriptional dysregulation in cancer progression. In addition, we will propose our views on how to employ state-of-the-art technologies to decode the unanswered questions in this field. Overall, this article motivates the study of 3D chromatin architecture in cancer, which allows for a better understanding of its pathogenesis and develop novel approaches for diagnosis and treatment of cancer.


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