Recent HIV-1 Infection Detection: Comparison of Incidence Estimates Derived by Laboratory Assays and Repeat Testing Data

2009 ◽  
Vol 51 (4) ◽  
pp. 502-505 ◽  
Author(s):  
Hong-Ha M Truong ◽  
Timothy Kellogg ◽  
Brian Louie ◽  
Jeffrey Klausner ◽  
James Dilley ◽  
...  
AIDS ◽  
2018 ◽  
Vol 32 (8) ◽  
pp. 1053-1057
Author(s):  
Kirsten White ◽  
Will Garner ◽  
Lilian Wei ◽  
Joseph J. Eron ◽  
Lijie Zhong ◽  
...  
Keyword(s):  

2020 ◽  
Vol 18 (4) ◽  
pp. 138-148
Author(s):  
I.A. Lapovok ◽  
◽  
D.V. Saleeva ◽  
A.A. Kirichenko ◽  
A.V. Murzakova ◽  
...  

Objective. To develop and validate the method of dual HIV infection detection based on the results of Sanger sequencing and to evaluate of dual HIV infection frequency in Russia. Materials and methods. We carried out the sequencing of HIV-1 pol gene fragment in model samples of dual HIV infection, the calculation of degeneracy bases index (DB-index), and the index of synonymity (SM-index) and determination of their threshold values for dual HIV infection detection. We analyzed nucleotide sequences of the pol gene fragment in HIV-1 samples (n = 1561) taken from Russian patients. Results. The threshold values of 34 for the DB-index and 0.05 for the SM-index allow detecting effectively the dual HIV infection using reverse transcriptase (RT) and protease-reverse transcriptase (PR-RT) fragments of the pol gene correspondingly. At total 21 (1.35%) dual HIV-infected samples (18 of which were collected in 2014 and later) were revealed in the collection studied; 12 of them were obtained from patients residing in the Central Federal District. An inverse correlation between the likelihood of dual HIV infection detecting and the duration of the patient's infection was found. In total, 11 out of 21 samples with dual HIV infection had mutations associated with drug resistance; 7 of them (33.3%) had substitutions that were not associated with natural polymorphism of HIV-1. Conclusion. The problem of dual HIV infection in Russia is actual and requires further study. Key words: HIV, dual HIV infection, drug resistance, nucleotide sequence, DB-index, SM-index, PR-RT region


2019 ◽  
Author(s):  
Joseph B. Sempa ◽  
Alex Welte ◽  
Michael P. Busch ◽  
Jake Hall ◽  
Dylan Hampton ◽  
...  

AbstractBackgroundTwo manufacturers, Maxim Biomedical and Sedia Biosciences Corporation, supply US CDC-approved versions of the HIV-1 Limiting Antigen Avidity EIA (LAg assay) for detecting ‘recent’ HIV infection in cross-sectional incidence estimation. This study assesses and compares the performance of the Maxim and Sedia LAg assays for incidence surveillance.MethodsWe ran both assays on a panel of 2,500 well-characterized HIV-1-infected specimens, most with estimated dates of (detectable) infection. We analysed concordance of assay results, assessed reproducibility using repeat testing and estimated the critical performance characteristics of a test for recent infection—mean duration of recent infection (MDRI) and false-recent rate (FRR)—for a range of normalized optical density (ODn) recency discrimination thresholds, alone and in combination with viral load thresholds. We further defined three hypothetical surveillance scenarios and evaluated overall performance for incidence surveillance, defined as the precision of incidence estimates, by estimating context-specific performance characteristics.ResultsThe Maxim assay produced lower ODn values than the Sedia assay on average, largely as a result of higher calibrator readings (mean calibrator OD of 0.749 vs. 0.643). Correlation of non-normalized OD readings was greater (R2 = 0.938) than those of ODn readings (R2 = 0.908), and the slope was closer to unity (1.054 vs. 0.899). Reproducibility of repeat testing of three blinded control specimens (25 replicates each) was slightly better for the Maxim assay (CV 8.9% to 14.8% vs. 13.2% to 15.0%). The MDRI of a Maxim-based algorithm at the ‘standard’ recency discrimination threshold in combination with viral load (ODn ≤1.5 & VL >1,000) was 201 days (95% CI: 180,223) and for Sedia was 171 days (95% CI: 152,191). Commensurately, the Maxim algorithm had a higher FRR in treatment-naive subjects (1.7% vs. 1.1%). We observed statistically significant differences in MDRI using the ODn alone (≤1.5) and in combination with viral load (>1,000). Under three fully-specified hypothetical surveillance scenarios (comparable to South Africa, Kenya and a concentrated epidemic), recent infection testing algorithms based on the two assays produced similar precision of incidence estimates.ConclusionsDifferences in ODn measurements between the Maxim and Sedia LAg assays on the same specimens largely resulted from differences in the reactivity of calibrators supplied by the manufacturers. Performance for surveillance purposes was extremely similar, although different ODn thresholds were optimal and different values of MDRI and FRR were appropriate for use in survey planning and incidence estimation.


Author(s):  
James K. Koehler ◽  
Steven G. Reed ◽  
Joao S. Silva

As part of a larger study involving the co-infection of human monocyte cultures with HIV and protozoan parasites, electron microscopic observations were made on the course of HIV replication and infection in these cells. Although several ultrastructural studies of the cytopathology associated with HIV infection have appeared, few studies have shown the details of virus production in “normal,” human monocytes/macrophages, one of the natural targets of the virus, and suspected of being a locus of quiescent virus during its long latent period. In this report, we detail some of the interactions of developing virons with the membranes and organelles of the monocyte host.Peripheral blood monocytes were prepared from buffy coats (Portland Red Cross) by Percoll gradient centrifugation, followed by adherence to cover slips. 90-95% pure monocytes were cultured in RPMI with 5% non-activated human AB serum for four days and infected with 100 TCID50/ml of HIV-1 for four hours, washed and incubated in fresh medium for 14 days.


1997 ◽  
Vol 23 (3) ◽  
pp. 83-92 ◽  
Author(s):  
D. Seilhean ◽  
A. Dzia-Lepfoundzou ◽  
V. Sazdovitch ◽  
B. Cannella ◽  
C. S. Raine ◽  
...  

2000 ◽  
Vol 14 (2) ◽  
pp. 50-55
Author(s):  
FORTHEPEDIATRICPULMONARYANDCA ◽  
H COHEN ◽  
X CHEN ◽  
S SUNKLE ◽  
L DAVIS ◽  
...  

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