scholarly journals A stochastic, evolutionary model for range shifts and richness on tropical elevational gradients under Quaternary glacial cycles

2010 ◽  
Vol 365 (1558) ◽  
pp. 3695-3707 ◽  
Author(s):  
Robert K. Colwell ◽  
Thiago F. Rangel
Keyword(s):  
Species Richness ◽  
Late Quaternary ◽  
Evolutionary Model ◽  
Range Shifts ◽  
Niche Conservatism ◽  
Glacial Cycles ◽  
Differential Survival ◽  
Elevational Gradients ◽  
Temperature Cycles ◽  
Chance Events

Quaternary glacial–interglacial cycles repeatedly forced thermal zones up and down the slopes of mountains, at all latitudes. Although no one doubts that these temperature cycles have left their signature on contemporary patterns of geography and phylogeny, the relative roles of ecology and evolution are not well understood, especially for the tropics. To explore key mechanisms and their interactions in the context of chance events, we constructed a geographical range-based, stochastic simulation model that incorporates speciation, anagenetic evolution, niche conservatism, range shifts and extinctions under late Quaternary temperature cycles along tropical elevational gradients. In the model, elevational patterns of species richness arise from the differential survival of founder lineages, consolidated by speciation and the inheritance of thermal niche characteristics. The model yields a surprisingly rich variety of realistic patterns of phylogeny and biogeography, including close matches to a variety of contemporary elevational richness profiles from an elevational transect in Costa Rica. Mountaintop extinctions during interglacials and lowland extinctions at glacial maxima favour mid-elevation lineages, especially under the constraints of niche conservatism. Asymmetry in temperature (greater duration of glacial than of interglacial episodes) and in lateral area (greater land area at low than at high elevations) have opposing effects on lowland extinctions and the elevational pattern of species richness in the model—and perhaps in nature, as well.

scholarly journals On the processes generating latitudinal richness gradients: identifying diagnostic patterns and predictions

2014 ◽  
Author(s):  
Allen H Hurlbert ◽  
James C Stegen
Keyword(s):  
Species Richness ◽  
Negative Relationship ◽  
Niche Conservatism ◽  
Glacial Cycles ◽  
Climatic Fluctuations ◽  
Extinction Rates ◽  
Available Energy ◽  
Speciation Rates ◽  
Tropical Climates ◽  
The Tropics

Many processes have been put forward to explain the latitudinal gradient in species richness. Here, we use a simulation model to examine four of the most common hypotheses and identify patterns that might be diagnostic of those four hypotheses. The hypotheses examined include (1) tropical niche conservatism, or the idea that the tropics are more diverse because a tropical clade origin has allowed more time for diversification in the tropics and has resulted in few species adapted to extra-tropical climates. (2) The productivity, or energetic constraints, hypothesis suggests that species richness is limited by the amount of biologically available energy in a region. (3) The tropical stability hypothesis argues that major climatic fluctuations and glacial cycles in extratropical regions have led to greater extinction rates and less opportunity for specialization relative to the tropics. (4) Finally, the speciation rates hypothesis suggests that the latitudinal richness gradient arises from a parallel gradient in rates of speciation. We found that tropical niche conservatism can be distinguished from the other three scenarios by phylogenies which are more balanced than expected, no relationship between mean root distance and richness across regions, and a homogeneous rate of speciation across clades and through time. The energy gradient, speciation gradient, and disturbance gradient scenarios all exhibited phylogenies which were more imbalanced than expected, showed a negative relationship between mean root distance and richness, and diversity-dependence of speciation rate estimates through time. Using Bayesian Analysis of Macroevolutionary Mixtures on the simulated phylogenies, we found that the relationship between speciation rates and latitude could distinguish among these three scenarios. We emphasize the importance of considering multiple hypotheses and focusing on diagnostic predictions instead of predictions that are consistent with more than one hypothesis.

scholarly journals On the processes generating latitudinal richness gradients: identifying diagnostic patterns and predictions

2014 ◽  
Author(s):  
Allen H Hurlbert ◽  
James C Stegen
Keyword(s):  
Species Richness ◽  
Negative Relationship ◽  
Niche Conservatism ◽  
Glacial Cycles ◽  
Climatic Fluctuations ◽  
Extinction Rates ◽  
Available Energy ◽  
Speciation Rates ◽  
Tropical Climates ◽  
The Tropics

Many processes have been put forward to explain the latitudinal gradient in species richness. Here, we use a simulation model to examine four of the most common hypotheses and identify patterns that might be diagnostic of those four hypotheses. The hypotheses examined include (1) tropical niche conservatism, or the idea that the tropics are more diverse because a tropical clade origin has allowed more time for diversification in the tropics and has resulted in few species adapted to extra-tropical climates. (2) The productivity, or energetic constraints, hypothesis suggests that species richness is limited by the amount of biologically available energy in a region. (3) The tropical stability hypothesis argues that major climatic fluctuations and glacial cycles in extratropical regions have led to greater extinction rates and less opportunity for specialization relative to the tropics. (4) Finally, the speciation rates hypothesis suggests that the latitudinal richness gradient arises from a parallel gradient in rates of speciation. We found that tropical niche conservatism can be distinguished from the other three scenarios by phylogenies which are more balanced than expected, no relationship between mean root distance and richness across regions, and a homogeneous rate of speciation across clades and through time. The energy gradient, speciation gradient, and disturbance gradient scenarios all exhibited phylogenies which were more imbalanced than expected, showed a negative relationship between mean root distance and richness, and diversity-dependence of speciation rate estimates through time. Using Bayesian Analysis of Macroevolutionary Mixtures on the simulated phylogenies, we found that the relationship between speciation rates and latitude could distinguish among these three scenarios. We emphasize the importance of considering multiple hypotheses and focusing on diagnostic predictions instead of predictions that are consistent with more than one hypothesis.

scholarly journals Links between plant species’ spatial and temporal responses to a warming climate

2014 ◽  
Vol 281 (1779) ◽  
pp. 20133017 ◽  
Author(s):  
Tatsuya Amano ◽  
Robert P. Freckleton ◽  
Simon A. Queenborough ◽  
Simon W. Doxford ◽  
Richard J. Smithers ◽  
...  
Keyword(s):  
Species Distribution Models ◽  
Range Shifts ◽  
Niche Conservatism ◽  
Historical Records ◽  
Perennial Species ◽  
Distribution Models ◽  
Climatic Niche ◽  
Warming Climate ◽  
Phenological Changes

To generate realistic projections of species’ responses to climate change, we need to understand the factors that limit their ability to respond. Although climatic niche conservatism, the maintenance of a species’s climatic niche over time, is a critical assumption in niche-based species distribution models, little is known about how universal it is and how it operates. In particular, few studies have tested the role of climatic niche conservatism via phenological changes in explaining the reported wide variance in the extent of range shifts among species. Using historical records of the phenology and spatial distribution of British plants under a warming climate, we revealed that: (i) perennial species, as well as those with weaker or lagged phenological responses to temperature, experienced a greater increase in temperature during flowering (i.e. failed to maintain climatic niche via phenological changes); (ii) species that failed to maintain climatic niche via phenological changes showed greater northward range shifts; and (iii) there was a complementary relationship between the levels of climatic niche conservatism via phenological changes and range shifts. These results indicate that even species with high climatic niche conservatism might not show range shifts as instead they track warming temperatures during flowering by advancing their phenology.

scholarly journals Large mammal species richness and late Quaternary precipitation change in south-western Australia

2016 ◽  
Vol 32 (6) ◽  
pp. 760-769 ◽  
Author(s):  
J. Tyler Faith ◽  
Joe Dortch ◽  
Chelsea Jones ◽  
James Shulmeister ◽  
Kenny J. Travouillon
Keyword(s):  
Species Richness ◽  
Western Australia ◽  
Late Quaternary ◽  
Precipitation Change ◽  
Mammal Species ◽  
Large Mammal

The Origin of Modern Atolls: Challenging Darwin's Deeply Ingrained Theory

2021 ◽  
Vol 13 (1) ◽  
pp. 537-573 ◽  
Author(s):  
André W. Droxler ◽  
Stéphan J. Jorry
Keyword(s):  
Sea Level ◽  
Late Quaternary ◽  
Direct Interaction ◽  
Evolutionary Model ◽  
Reef Growth ◽  
Sea Level Fluctuations ◽  
Fringing Reefs ◽  
Volcanic Islands ◽  
Karst Model ◽  
The Tropical Pacific

In 1842, Darwin identified three types of reefs: fringing reefs, which are directly attached to volcanic islands; barrier reefs, which are separated from volcanic islands by lagoons; and ring reefs, which enclose only a lagoon and are defined as atolls. Moreover, he linked these reef types through an evolutionary model in which an atoll is the logical end point of a subsiding volcanic edifice, as he was unaware of Quaternary glaciations. As an alternative, starting in the 1930s, several authors proposed the antecedent karst model; in this model, atolls formed as a direct interaction between subsidence and karst dissolution that occurred preferentially in the bank interiors rather than on their margins through exposure during glacial lowstands of sea level. Atolls then developed during deglacial reflooding of the glacial karstic morphologies by preferential stacked coral-reef growth along their margins. Here, a comprehensive new model is proposed, based on the antecedent karst model and well-established sea-level fluctuations during the last 5 million years, by demonstrating that most modern atolls from the Maldives Archipelago and from the tropical Pacific and southwest Indian Oceans are rooted on top of late Pliocene flat-topped banks. The volcanic basement, therefore, has had no influence on the late Quaternary development of these flat-topped banks into modern atolls. During the multiple glacial sea-level lowstands that intensified throughout the Quaternary, the tops of these banks were karstified; then, during each of the five mid-to-late Brunhes deglaciations, coral reoccupied their raised margins and grew vertically, keeping up with sea-level rise and creating the modern atolls.

scholarly journals Temporal patterns of diversification in Brassicaceae demonstrate decoupling of rate shifts and mesopolyploidization events

2019 ◽  
Vol 125 (1) ◽  
pp. 29-47 ◽  
Author(s):  
Xiao-Chen Huang ◽  
Dmitry A German ◽  
Marcus A Koch
Keyword(s):  
Species Richness ◽  
Driving Forces ◽  
Size Variation ◽  
Internal Transcribed Spacers ◽  
Nuclear Ribosomal Dna ◽  
Published Data ◽  
Glacial Cycles ◽  
Genome Size Variation ◽  
Crown Group ◽  
Plastid Genomes

Abstract Background and Aims Whole-genome duplication (WGD) events are considered important driving forces of diversification. At least 11 out of 52 Brassicaceae tribes had independent mesopolyploid WGDs followed by diploidization processes. However, the association between mesopolyploidy and subsequent diversification is equivocal. Herein we show the results from a family-wide diversification analysis on Brassicaceae, and elaborate on the hypothesis that polyploidization per se is a fundamental driver in Brassicaceae evolution. Methods We established a time-calibrated chronogram based on whole plastid genomes comprising representative Brassicaceae taxa and published data spanning the entire Rosidae clade. This allowed us to set multiple calibration points and anchored various Brassicaceae taxa for subsequent downstream analyses. All major splits among Brassicaceae lineages were used in BEAST analyses of 48 individually analysed tribes comprising 2101 taxa in total using the internal transcribed spacers of nuclear ribosomal DNA. Diversification patterns were investigated on these tribe-wide chronograms using BAMM and were compared with family-wide data on genome size variation and species richness. Key Results Brassicaceae diverged 29.9 million years ago (Mya) during the Oligocene, and the majority of tribes started diversification in the Miocene with an average crown group age of about 12.5 Mya. This matches the cooling phase right after the Mid Miocene climatic optimum. Significant rate shifts were detected in 12 out of 52 tribes during the Mio- and Pliocene, decoupled from preceding mesopolyploid WGDs. Among the various factors analysed, the combined effect of tribal crown group age and net diversification rate (speciation minus extinction) is likely to explain sufficiently species richness across Brassicaceae tribes. Conclusions The onset of the evolutionary splits among tribes took place under cooler and drier conditions. Pleistocene glacial cycles may have contributed to the maintenance of high diversification rates. Rate shifts are not consistently associated with mesopolyploid WGD. We propose, therefore, that WGDs in general serve as a constant ‘pump’ for continuous and high species diversification.

scholarly journals The stratigraphy of the Neogene-Quaternary succession in the southwest Netherlands from the Schelphoek borehole (42G4-11/42G0022) – a sequence-stratigraphic approach

2007 ◽  
Vol 86 (4) ◽  
pp. 317-332 ◽  
Author(s):  
A.A. Slupik ◽  
F.P. Wesselingh ◽  
A.C. Janse ◽  
J.W.F. Reumer
Keyword(s):  
The Netherlands ◽  
Coastal Area ◽  
Late Quaternary ◽  
Tidal Channel ◽  
The South ◽  
Glacial Cycles ◽  
Sequence Stratigraphic ◽  
The North ◽  
Mammal Fauna

AbstractWe investigate the stratigraphy of Neogene and Quaternary intervals of the Schelphoek borehole (Schouwen, Zeeland, the Netherlands). The Breda Formation (Miocene-Zanclean) contains three sequences separated by hiatuses. The Oosterhout Formation (Zanclean-Piacenzian) contains at least two sequences. This formation is overlain by seven sequences of the Gelasian Maassluis Formation that almost certainly represent glacial cycles. The three lowermost sequences are provisionally assigned to the Praetiglian (MIS 96, MIS 98 and MIS 100). A large hiatus exists between the top of the Maassluis Formation and the base of the late Middle to Late Quaternary succession. Due to extensivein situreworking of older strata (including fossils) at the base of several of the formations, their exact boundaries are difficult to establish. The Neogene succession in the Schelphoek borehole is compared to the stratigraphic successions in the Antwerp area to the south and the Dutch coastal area and continental platform to the north. Finally, the stratigraphic context of the Gelasian (‘Tiglian’) mammal fauna dredged from the bottom of a major tidal channel in the adjacent Oosterschelde is assessed by comparison with the Schelphoek borehole.

Late Quaternary Iceberg Rafting along the Antarctic Peninsula Continental Rise and in the Weddell and Scotia Seas

2001 ◽  
Vol 56 (3) ◽  
pp. 308-321 ◽  
Author(s):  
Colm Ó Cofaigh ◽  
Julian A. Dowdeswell ◽  
Carol J. Pudsey
Keyword(s):  
Antarctic Peninsula ◽  
Late Quaternary ◽  
Sediment Cores ◽  
Regional Scale ◽  
Ice Sheet ◽  
Glacial Cycles ◽  
Continental Rise ◽  
The North ◽  
Glacial Periods ◽  
The Antarctic

AbstractSediment cores from the continental rise west of the Antarctic Peninsula and the northern Weddell and Scotia Seas were investigated for their ice-rafted debris (IRD) content by lithofacies logging and counting of particles >0.2 cm from core x-radiographs. The objective of the study was to determine if there are iceberg-rafted units similar to the Heinrich layers of the North Atlantic that might record periodic, widespread catastrophic collapse of basins within the Antarctic Ice Sheet during the Quaternary. Cores from the Antarctic Peninsula margin contain prominent IRD-rich units, with maximum IRD concentrations in oxygen isotope stages 1, 5, and 7. However, the greater concentration of IRD in interglacial stages is the result of low sedimentation rates and current winnowing, rather than regional-scale episodes of increased iceberg rafting. This is also supported by markedly lower mass accumulation rates (MAR) during interglacial periods versus glacial periods. Furthermore, thinner IRD layers within isotope stages 2–4 and 6 cannot be correlated between individual cores along the margin. This implies that the ice sheet over the Antarctic Peninsula did not undergo widespread catastrophic collapse along its western margin during the late Quaternary (isotope stages 1–7). Sediment cores from the Weddell and Scotia Seas are characterized by low IRD concentrations throughout, and the IRD signal generally appears to be of limited regional significance with few strong peaks that can be correlated between cores. Tentatively, this argues against pervasive, rapid ice-sheet collapse around the Weddell embayment over the last few glacial cycles.

Patterns of species richness and conservation in the Caatinga along elevational gradients in a semiarid ecosystem

2014 ◽  
Vol 110 ◽  
pp. 47-52 ◽  
Author(s):  
Fernanda Kelly Gomes da Silva ◽  
Sérgio de Faria Lopes ◽  
Luiz Carlos Serramo Lopez ◽  
José Iranildo Miranda de Melo ◽  
Dilma Maria de Brito Melo Trovão
Keyword(s):  
Species Richness ◽  
Elevational Gradients ◽  
Semiarid Ecosystem
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