Nocardioides daeguensis sp. nov., a nitrate-reducing bacterium isolated from activated sludge of an industrial wastewater treatment plant

2013 ◽  
Vol 63 (Pt_10) ◽  
pp. 3727-3732 ◽  
Author(s):  
Yingshun Cui ◽  
Sung-Geun Woo ◽  
Jangho Lee ◽  
Sahastranshu Sinha ◽  
Myung-Suk Kang ◽  
...  

A Gram-reaction-positive, rod-shaped, non-spore-forming bacterium (strain 2C1-5T) was isolated from activated sludge of an industrial wastewater treatment plant in Daegu, South Korea. Its taxonomic position was investigated by using a polyphasic approach. On the basis of 16S rRNA gene sequence similarity, the closest phylogenetic relatives were the type strains of Nocardioides nitrophenolicus (98.6 % similarity), N. kongjuensis (98.5 %), N. caeni (98.4 %), N. simplex (98.3 %), N. aromaticivorans (98.1 %) and N. ginsengisoli (97.5 %); the phylogenetic distance from other species with validly published names within the genus Nocardioides was greater than 3 %. Strain 2C1-5T was characterized chemotaxonomically as having ll-2,6-diaminopimelic acid in the cell-wall peptidoglycan, MK-8(H4) as the predominant menaquinone and iso-C16 : 0, C16 : 0 and C17 : 1ω6c as the major fatty acids. The G+C content of the genomic DNA was 74.9 mol%. These chemotaxonomic properties and phenotypic characteristics supported the affiliation of strain 2C1-5T to the genus Nocardioides . The results of physiological and biochemical tests allowed genotypic and phenotypic differentiation of strain 2C1-5T from existing species with validly published names. Therefore, strain 2C1-5T represents a novel species of the genus Nocardioides , for which the name Nocardioides daeguensis sp. nov. is proposed, with the type strain 2C1-5T ( = JCM 17460T = KCTC 19799T).

2013 ◽  
Vol 63 (Pt_3) ◽  
pp. 1111-1118 ◽  
Author(s):  
Jinsoo Kim ◽  
Sathiyaraj Srinivasan ◽  
Taek You ◽  
John J. Bang ◽  
Sujeong Park ◽  
...  

A Gram-stain-positive, non-motile, chemo-organotrophic, mesophilic, aerobic bacterium, designated A1T, was isolated from sludge of a wastewater treatment plant. Strain A1T showed good ability to degrade ammonia and grew well on media amended with methanol and ammonia. Strain A1T grew with 0–11 % (w/v) NaCl, at 20–42 °C, but not <15 or >45 °C and at pH 6–10 (optimum pH 8.0–9.0). The isolate was catalase-positive and oxidase-negative. The DNA G+C content was 70.7 mol%. A comparative analysis of 16S rRNA gene sequences revealed that strain A1T formed a distinct phyletic lineage in the genus Brevibacterium and showed high sequence similarity with Brevibacterium casei NCDO 2048T (96.9 %), Brevibacterium celere KMM 3637T (96.9 %) and Brevibacterium sanguinis CF63T (96.4 %). DNA–DNA hybridization revealed <43 % DNA–DNA relatedness between the isolate and its closest phylogenetic relatives. The affiliation of strain A1T with the genus Brevibacterium was supported by the chemotaxonomic data: predominant quinone menaquinone MK-7(H2); polar lipid profile containing diphosphatidylglycerol, phosphatidylglycerol and an unidentified glycolipid; characteristic cell-wall diamino acid meso-diaminopimelic acid; whole-cell sugars galactose, xylose and ribose; absence of mycolic acids; and major fatty acids iso-C15 : 0, anteiso-C15 : 0 and anteiso-C17 : 0. The results of physiological and biochemical tests allowed phenotypic differentiation of strain A1T from members of the genus Brevibacterium . On the basis of the results in this study, a novel species, Brevibacterium ammoniilyticum sp. nov., is proposed. The type strain is A1T ( = KEMC 41-098T  = JCM 17537T  = KACC 15558T).


1988 ◽  
Vol 20 (10) ◽  
pp. 201-210 ◽  
Author(s):  
S. Matsui ◽  
Y. Okawa ◽  
R. Ota

Twenty-eight process wastewaters and thirty-seven organic substances identified in the wastewater of the Kashima petrochemical complex were subjected to biodegradability tests. The tests consisted of the activated sludge degradability method and a supplementary test using the respiration meter method. Both tests utilized the activated sludge of the Fukashiba industrial wastewater treatment plant, which was acclimatized to the wastewater and organic substances. The 28 process wastewaters were classified into biodegradable, less biodegradable, and non-biodegradable according to the percentage TOC removal and the BOD5/TOC ratio of the wastewater. The 37 organic substances were also classified into biodegradable, less biodegradable and non-biodegradable according to TOC and CODMn removal. In general, chlorinated compounds, nitro-aromatics and polymerized compounds were difficult to biodegrade. From the biodegradability tests of the factory wastewaters, it was found that the refractory CODMn loads of these factories contributed to the load remaining in the effluent of the wastewater treatment plant. Various improvements were made to reduce the discharge of refractory substances from the factories.


2015 ◽  
Vol 65 (Pt_1) ◽  
pp. 77-84 ◽  
Author(s):  
Madan Junghare ◽  
Bernhard Schink

A strictly anaerobic, mesophilic, sulfate-reducing bacterium, strain KoBa311T, isolated from the wastewater treatment plant at Konstanz, Germany, was characterized phenotypically and phylogenetically. Cells were Gram-stain-negative, non-motile, oval to short rods, 3–5 µm long and 0.8–1.0 µm wide with rounded ends, dividing by binary fission and occurring singly or in pairs. The strain grew optimally in freshwater medium and the optimum temperature was 30 °C. Strain KoBa311T showed optimum growth at pH 7.3−7.6. Organic electron donors were oxidized completely to carbon dioxide concomitant with sulfate reduction to sulfide. At excess substrate supply, substrates were oxidized incompletely and acetate (mainly) and/or propionate accumulated. The strain utilized short-chain fatty acids, alcohols (except methanol) and benzoate. Sulfate and DMSO were used as terminal electron acceptors for growth. The genomic DNA G+C content was 52.3 mol% and the respiratory quinone was menaquinone MK-5 (V-H2). The major fatty acids were C16 : 0, C16 : 1ω7c/ω6c and C18 : 1ω7c. Phylogenetic analysis based on 16S rRNA gene sequences placed strain KoBa311T within the family Desulfobulbaceae in the class Deltaproteobacteria . Its closest related bacterial species on the basis of the distance matrix were Desulfobacterium catecholicum DSM 3882T (93.0 % similarity), Desulfocapsa thiozymogenes (93.1 %), Desulforhopalus singaporensis (92.9 %), Desulfopila aestuarii (92.4 %), Desulfopila inferna JS_SRB250LacT (92.3 %) and Desulfofustis glycolicus (92.3 %). On the basis of phylogenetic, physiological and chemotaxonomic characteristics, strain KoBa311T was distinct from any related type species. Therefore, strain KoBa311T is considered to represent a novel species of a new genus, for which the name Desulfoprunum benzoelyticum gen. nov., sp. nov. is proposed. The type strain of Desulfoprunum benzoelyticum is KoBa311T ( = DSM 28570T = KCTC 15441T).


2013 ◽  
Vol 63 (Pt_7) ◽  
pp. 2588-2593 ◽  
Author(s):  
Bárbara Almeida ◽  
Ivone Vaz-Moreira ◽  
Peter Schumann ◽  
Olga C. Nunes ◽  
Gilda Carvalho ◽  
...  

A Gram-positive, aerobic, non-motile, non-endospore-forming rod-shaped bacterium with ibuprofen-degrading capacity, designated strain I11T, was isolated from activated sludge from a wastewater treatment plant. The major respiratory quinone was demethylmenaquinone DMK-7, C18 : 1 cis9 was the predominant fatty acid, phosphatidylglycerol was the predominant polar lipid, the cell wall contained meso-diaminopimelic acid as the diagnostic diamino acid and the G+C content of the genomic DNA was 74.1 mol%. On the basis of 16S rRNA gene sequence analysis, the closest phylogenetic neighbours of strain I11T were Patulibacter ginsengiterrae CECT 7603T (96.8 % similarity), Patulibacter minatonensis DSM 18081T (96.6 %) and Patulibacter americanus DSM 16676T (96.6 %). Phenotypic characterization supports the inclusion of strain I11T within the genus Patulibacter (phylum Actinobacteria) . However, distinctive features and 16S rRNA gene sequence analysis suggest that is represents a novel species, for which the name Patulibacter medicamentivorans sp. nov. is proposed. The type strain is I11T ( = DSM 25962T = CECT 8141T).


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