scholarly journals Accelerated DNA evolution in rats is driven by differential methylation in sperm

2015 ◽  
Author(s):  
Xiao-Hui Liu ◽  
Jin-Min Lian ◽  
Fei Ling ◽  
Ning Li ◽  
Da-Wei Wang ◽  
...  
Keyword(s):  
Nucleotide Diversity ◽  
Methylation Status ◽  
Epigenetic Inheritance ◽  
Strong Relationship ◽  
Chromatin Accessibility ◽  
Dna Variation ◽  
Transgenerational Epigenetic Inheritance ◽  
Relative Contribution ◽  
Lamarckian Inheritance ◽  
Environmental Difference

Lamarckian inheritance has been largely discredited until the recent discovery of transgenerational epigenetic inheritance. However, transgenerational epigenetic inheritance is still under debate for unable to rule out DNA sequence changes as the underlying cause for heritability. Here, through profiling of the sperm methylomes and genomes of two recently diverged rat subspecies, we analyzed the relationship between epigenetic variation and DNA variation, and their relative contribution to evolution of species. We found that only epigenetic markers located in differentially methylated regions (DMRs) between subspecies, but not within subspecies, can be stably and effectively passed through generations. DMRs in response to both random and stable environmental difference show increased nucleotide diversity, and we demonstrated that it is variance of methylation level but not deamination caused by methylation driving increasing of nucleotide diversity in DMRs, indicating strong relationship between environment-associated changes of chromatin accessibility and increased nucleotide diversity. Further, we detected that accelerated fixation of DNA variants occur only in inter-subspecies DMRs in response to stable environmental difference but not intra-subspecies DMRs in response to random environmental difference or non-DMRs, indicating that this process is possibly driven by environment-associated fixation of divergent methylation status. Our results thus establish a bridge between Lamarckian inheritance and Darwinian selection.

How do histone modifications contribute to transgenerational epigenetic inheritance in C. elegans?

2020 ◽  
Vol 48 (3) ◽  
pp. 1019-1034 ◽  
Author(s):  
Rachel M. Woodhouse ◽  
Alyson Ashe
Keyword(s):  
Histone Modifications ◽  
Molecular Mechanisms ◽  
Epigenetic Inheritance ◽  
Nematode Caenorhabditis Elegans ◽  
Histone Methyltransferases ◽  
Transgenerational Epigenetic Inheritance ◽  
C Elegans ◽  
Recent Developments ◽  
Gene Regulatory

Gene regulatory information can be inherited between generations in a phenomenon termed transgenerational epigenetic inheritance (TEI). While examples of TEI in many animals accumulate, the nematode Caenorhabditis elegans has proven particularly useful in investigating the underlying molecular mechanisms of this phenomenon. In C. elegans and other animals, the modification of histone proteins has emerged as a potential carrier and effector of transgenerational epigenetic information. In this review, we explore the contribution of histone modifications to TEI in C. elegans. We describe the role of repressive histone marks, histone methyltransferases, and associated chromatin factors in heritable gene silencing, and discuss recent developments and unanswered questions in how these factors integrate with other known TEI mechanisms. We also review the transgenerational effects of the manipulation of histone modifications on germline health and longevity.

scholarly journals Chromatin Modifiers SET-25 and SET-32 Are Required for Establishment but Not Long-Term Maintenance of Transgenerational Epigenetic Inheritance

Cell Reports ◽  
2018 ◽  
Vol 25 (8) ◽  
pp. 2259-2272.e5 ◽  
Author(s):  
Rachel M. Woodhouse ◽  
Gabriele Buchmann ◽  
Matthew Hoe ◽  
Dylan J. Harney ◽  
Jason K.K. Low ◽  
...  
Keyword(s):  
Epigenetic Inheritance ◽  
Transgenerational Epigenetic Inheritance ◽  
Term Maintenance ◽  
Chromatin Modifiers

scholarly journals The social construction of the social epigenome and the larger biological context

2020 ◽  
Vol 13 (1) ◽  
Author(s):  
Ute Deichmann
Keyword(s):  
Cell Biology ◽  
Epigenetic Inheritance ◽  
Epistemic Status ◽  
Regulatory Sequences ◽  
Social Scientists ◽  
Epigenetic Marks ◽  
The Social ◽  
Lamarckian Inheritance ◽  
Definition Of ◽  
Scientific Facts

Abstract Epigenetics researchers in developmental, cell, and molecular biology greatly diverge in their understanding and definitions of epigenetics. In contrast, social epigeneticists, e.g., sociologists, scholars of STS, and behavioural scientists, share a focus and definition of epigenetics that is environmentally caused and trans-generationally inherited. This article demonstrates that this emphasis on the environment and on so-called Lamarckian inheritance, in addition to other factors, reflects an interdisciplinary power struggle with genetics, in which epigenetics appears to grant the social sciences a higher epistemic status. Social scientists’ understanding of epigenetics, thus, appears in part to be socially constructed, i.e., the result of extra-scientific factors, such as social processes and the self-interest of the discipline. This article argues that social epigeneticists make far-reaching claims by selecting elements from research labelled epigenetics in biology while ignoring widely confirmed scientific facts in genetics and cell biology, such as the dependence of epigenetic marks on DNA sequence-specific events, or the lack of evidence for the lasting influence of the environment on epigenetic marks or the epigenome. Moreover, they treat as a given crucial questions that are far from resolved, such as what role, if any, DNA methylation plays in the complex biochemical system of regulating gene activity. The article also points out incorrect perceptions and media hypes among biological epigeneticists and calls attention to an apparent bias among scientific journals that prefer papers that promote transgenerational epigenetic inheritance over articles that critique it. The article concludes that while research labelled epigenetics contributes significantly to our knowledge about chromatin and the genome, it does not, as is often claimed, rehabilitate Lamarck or overthrow the fundamental biological principles of gene regulation, which are based on specific regulatory sequences of the genome.

Transgenerational Epigenetic Inheritance

2018 ◽  
Vol 52 (1) ◽  
pp. 21-41 ◽  
Author(s):  
Ana Bošković ◽  
Oliver J. Rando
Keyword(s):  
Genomic Dna ◽  
Epigenetic Inheritance ◽  
Model Systems ◽  
Future Generations ◽  
Molecular Pathways ◽  
Epigenetic Changes ◽  
Transgenerational Epigenetic Inheritance ◽  
Epigenetic Information ◽  
Environmental Perturbations ◽  
Multicellular Organisms

Inheritance of genomic DNA underlies the vast majority of biological inheritance, yet it has been clear for decades that additional epigenetic information can be passed on to future generations. Here, we review major model systems for transgenerational epigenetic inheritance via the germline in multicellular organisms. In addition to surveying examples of epivariation that may arise stochastically or in response to unknown stimuli, we also discuss the induction of heritable epigenetic changes by genetic or environmental perturbations. Mechanistically, we discuss the increasingly well-understood molecular pathways responsible for epigenetic inheritance, with a focus on the unusual features of the germline epigenome.

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