scholarly journals Spiraling Complexity: A Test of the Snowball Effect in a Computational Model of RNA Folding

2016 ◽  
Author(s):  
Ata Kalirad ◽  
Ricardo B. R. Azevedo

ABSTRACTGenetic incompatibilities can emerge as a by-product of genetic divergence. According to Dobzhansky and Muller, an allele that fixes in one population may be incompatible with an allele at a different locus in another population when the two alleles are brought together in hybrids. Orr showed that the number of Dobzhansky–Muller incompatibilities (DMIs) should accumulate faster than linearly—i.e., snowball—as two lineages diverge. Several studies have attempted to test the snowball effect using data from natural populations. One limitation of these studies is that they have focused on predictions of the Orr model but not on its underlying assumptions. Here we use a computational model of RNA folding to test both predictions and assumptions of the Orr model. Two populations are allowed to evolve in allopatry on a holey fitness landscape. We find that the number of inviable introgressions (an indicator for the number of DMIs) snowballs, but does so more slowly than expected. We show that this pattern is explained, in part, by the fact that DMIs can disappear after they have arisen, contrary to the assumptions of the Orr model. This occurs because DMIs become progressively more complex (i.e., involve alleles at more loci) as a result of later substitutions. We also find that most DMIs involve more than two loci—i.e., they are complex. Reproductive isolation does not snowball because DMIs do not act independently of each other. We conclude that the RNA model supports the central prediction of the Orr model that the number of DMIs snowballs, but challenges other predictions, as well as some of its underlying assumptions.

Genetics ◽  
2016 ◽  
Vol 206 (1) ◽  
pp. 377-388 ◽  
Author(s):  
Ata Kalirad ◽  
Ricardo B. R. Azevedo

1966 ◽  
Vol 7 (2) ◽  
pp. 255-266 ◽  
Author(s):  
Wyatt W. Anderson

1. Six initially identical populations of Drosophila pseudoobscura have been maintained in population cages for 7 years. Two populations have been kept at 16°C, two at 25°C, and two at 27°C.2. One and a half years after the start, there was no significant genetic divergence in body size among the populations. When the populations were about 6 years old, a striking genetic divergence in body size was found. The genetic difference between the populations having the smallest and the largest mean sizes is over half the total phenotypic change in size between the two extreme temperatures at which the populations were kept. The populations kept at the lower temperature have genetically larger flies than the populations kept at the higher temperatures.3. Accompanying the changes in body size were changes in the time of develop ment from egg to adult, the faster developers being the larger flies.4. The F1 hybrids from crossses between Vetukhiv's populations showed non-additivity of the genes for body size, the F1's in most cases being significantly larger than the midparent. There was no change in variability of body size in the F1 or F2 hybrids.5. The temperature-directed selection for body size found in Vetukhiv's experimental populations may well be similar in kind to that which has produced temperature-oriented geographic gradients for body size in natural populations of several species of Drosophila.


Genetics ◽  
1978 ◽  
Vol 88 (2) ◽  
pp. 367-390
Author(s):  
Ranajit Chakraborty ◽  
Paul A Fuerst ◽  
Masatoshi Nei

ABSTRACT With the aim of testing the validity of the mutation-drift hypothesis, we examined the pattern of genetic differentiation between populations by using data from Drosophila, fishes, reptiles, and mammals. The observed relationship between genetic identity and correlation of heterozygosities of different populations or species was generally in good agreement with the theoretical expectations from the mutation-drift theory, when the variation in mutation rate among loci was taken into account. In some species of Drosophila, however, the correlation was unduly high. The relationship between the mean and variance of genetic distance was also in good agreement with the theoretical prediction in almost all organisms. We noted that both the distribution of heterozygosity within species and the pattern of genetic differentiation between species can be explained by the same set of genetic parameters in each group of organisms. Alternative hypotheses for explaining these observations are discussed.


2019 ◽  
Vol 36 (8) ◽  
pp. 1686-1700 ◽  
Author(s):  
Covadonga Vara ◽  
Laia Capilla ◽  
Luca Ferretti ◽  
Alice Ledda ◽  
Rosa A Sánchez-Guillén ◽  
...  

Abstract One of the major challenges in evolutionary biology is the identification of the genetic basis of postzygotic reproductive isolation. Given its pivotal role in this process, here we explore the drivers that may account for the evolutionary dynamics of the PRDM9 gene between continental and island systems of chromosomal variation in house mice. Using a data set of nearly 400 wild-caught mice of Robertsonian systems, we identify the extent of PRDM9 diversity in natural house mouse populations, determine the phylogeography of PRDM9 at a local and global scale based on a new measure of pairwise genetic divergence, and analyze selective constraints. We find 57 newly described PRDM9 variants, this diversity being especially high on Madeira Island, a result that is contrary to the expectations of reduced variation for island populations. Our analysis suggest that the PRDM9 allelic variability observed in Madeira mice might be influenced by the presence of distinct chromosomal fusions resulting from a complex pattern of introgression or multiple colonization events onto the island. Importantly, we detect a significant reduction in the proportion of PRDM9 heterozygotes in Robertsonian mice, which showed a high degree of similarity in the amino acids responsible for protein–DNA binding. Our results suggest that despite the rapid evolution of PRDM9 and the variability detected in natural populations, functional constraints could facilitate the accumulation of allelic combinations that maintain recombination hotspot symmetry. We anticipate that our study will provide the basis for examining the role of different PRDM9 genetic backgrounds in reproductive isolation in natural populations.


2020 ◽  
Vol 375 (1806) ◽  
pp. 20190532 ◽  
Author(s):  
Alexandre Blanckaert ◽  
Claudia Bank ◽  
Joachim Hermisson

Gene flow tends to impede the accumulation of genetic divergence. Here, we determine the limits for the evolution of postzygotic reproductive isolation in a model of two populations that are connected by gene flow. We consider two selective mechanisms for the creation and maintenance of a genetic barrier: local adaptation leads to divergence among incipient species due to selection against migrants, and Dobzhansky–Muller incompatibilities (DMIs) reinforce the genetic barrier through selection against hybrids. In particular, we are interested in the maximum strength of the barrier under a limited amount of local adaptation, a challenge that many incipient species may initially face. We first confirm that with classical two-locus DMIs, the maximum amount of local adaptation is indeed a limit to the strength of a genetic barrier. However, with three or more loci and cryptic epistasis, this limit holds no longer. In particular, we identify a minimal configuration of three epistatically interacting mutations that is sufficient to confer strong reproductive isolation. This article is part of the theme issue ‘Towards the completion of speciation: the evolution of reproductive isolation beyond the first barriers’.


The Auk ◽  
2005 ◽  
Vol 122 (3) ◽  
pp. 793-802 ◽  
Author(s):  
Gabriel D. McNett ◽  
Karen Marchetti

Abstract Accurate assessment of color is essential in testing the adaptive significance of color variation in avian plumage. Over the past decade, use of objective methods for assessing color has increased, with particular emphasis on ultraviolet (UV) wavelengths. Researchers have used various source materials, most notably museum specimens, to extend or represent color measurements of individuals in natural populations. Here, we address whether the colors seen in museum specimens accurately represent the colors seen in natural populations. We focus on UV wavelengths and carotenoid-derived colors across 10 species of wood-warblers (Parulidae). Our results indicate an uneven decrease in brightness across the color spectrum, with greater relative decrease in shorter wavelengths in museum specimens. That decrease leads to differences in both hue and chroma between living and museum specimens. The difference from live specimens appears to increase with the museum specimen's age. Our results suggest that caution is needed when using data from museum specimens to test hypotheses on plumage coloration, particularly those involving communication. Degradación Ultravioleta en Parches de Carotenoides: Especímenes Vivos versus Especímenes de Museo de Especies de la Familia Parulidae


2013 ◽  
Vol 27 (1) ◽  
pp. 76-87 ◽  
Author(s):  
R. A. Sánchez-Guillén ◽  
A. Córdoba-Aguilar ◽  
A. Cordero-Rivera ◽  
M. Wellenreuther

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