scholarly journals Simultaneous Modelling of Movement, Measurement Error, and Observer Dependence in Double-Observer Distance Sampling Surveys

2017 ◽  
Author(s):  
By Paul B. Conn ◽  
Ray T. Alisauskas

Mark-recapture distance sampling uses detections, non-detections and recorded distances of animals encountered in transect surveys to estimate abundance. However, commonly available distance sampling estimators require that distances to target animals are made without error and that animals are stationary while sampling is being conducted. In practice these requirements are often violated. In this paper, we describe a marginal likelihood framework for estimating abundance from double-observer data that can accommodate movement and measurement error when observations are made consecutively (as with front and rear observers) and when animals are randomly distributed when detected by the first observer. Our framework requires that two observers independently detect and record binned distances to observed animal groups, as we well as a binary indicator for whether animals were moving or not. We then assume that stationary animals are subject to measurement error whereas moving animals are subject to both movement and measurement error. Integrating over unknown animal locations, we construct a marginal likelihood for detection, movement, and measurement error parameters. Estimates of animal abundance are then obtained using a modified Horvitz-Thompson-like estimator. In addition, unmodelled heterogeneity in detection probability can be accommodated through observer dependence parameters. Using simulation, we show that our approach yields low bias compared to approaches that ignore movement and/or measurement error, including in cases where there is considerable detection heterogeneity. We demonstrate our approach using data from a double-observer waterfowl helicopter survey.


2005 ◽  
Vol 32 (3) ◽  
pp. 211 ◽  
Author(s):  
Gary C. White

One of the most pervasive uses of indices of wildlife populations is uncorrected counts of animals. Two examples are the minimum number known alive from capture and release studies, and aerial surveys where the detection probability is not estimated from a sightability model, marked animals, or distance sampling. Both the mark–recapture and distance-sampling estimators are techniques to estimate the probability of detection of an individual animal (or cluster of animals), which is then used to correct a count of animals. However, often the number of animals in a survey is inadequate to compute an estimate of the detection probability and hence correct the count. Modern methods allow sophisticated modelling to estimate the detection probability, including incorporating covariates to provide additional information about the detection probability. Examples from both distance and mark–recapture sampling are presented to demonstrate the approach.



2021 ◽  
pp. 1-22
Author(s):  
Emily Berg ◽  
Johgho Im ◽  
Zhengyuan Zhu ◽  
Colin Lewis-Beck ◽  
Jie Li

Statistical and administrative agencies often collect information on related parameters. Discrepancies between estimates from distinct data sources can arise due to differences in definitions, reference periods, and data collection protocols. Integrating statistical data with administrative data is appealing for saving data collection costs, reducing respondent burden, and improving the coherence of estimates produced by statistical and administrative agencies. Model based techniques, such as small area estimation and measurement error models, for combining multiple data sources have benefits of transparency, reproducibility, and the ability to provide an estimated uncertainty. Issues associated with integrating statistical data with administrative data are discussed in the context of data from Namibia. The national statistical agency in Namibia produces estimates of crop area using data from probability samples. Simultaneously, the Namibia Ministry of Agriculture, Water, and Forestry obtains crop area estimates through extension programs. We illustrate the use of a structural measurement error model for the purpose of synthesizing the administrative and survey data to form a unified estimate of crop area. Limitations on the available data preclude us from conducting a genuine, thorough application. Nonetheless, our illustration of methodology holds potential use for a general practitioner.





2010 ◽  
Vol 67 (4) ◽  
pp. 641-658 ◽  
Author(s):  
Michael C. Melnychuk ◽  
Carl J. Walters

We developed a method to predict the probability of detecting acoustic tags crossing a receiver station using only detection information at that station. This method is suitable for acoustic or radio telemetry studies in which individually tagged animals migrate past fixed stations (where a station may consist of one or more receivers). It is based on fitting attenuation models to sequences of detections and missed transmissions of individually coded tags in fish migrating past stations of the Pacific Ocean Shelf Tracking Project (POST). We used estimated attenuation model parameters from detected fish at each station to predict the number of fish that crossed the station undetected, which in turn was used to calculate the local detection probability. This estimator was correlated (r = 0.54–0.81 in river and coastal habitats) with mark–recapture estimates of detection probability (pmr) that use nonlocal detection information at stations further along migration routes. This local detection probability estimate can be used as a covariate of pmr in mark–recapture models and can predict approximate values of pmr at final detection stations where pmr is not estimable because of the lack of recaptures further along migration routes.



The Auk ◽  
2006 ◽  
Vol 123 (3) ◽  
pp. 735-752 ◽  
Author(s):  
Michelle L. Kissling ◽  
Edward O. Garton

Abstract Point counts are the method most commonly used to estimate abundance of birds, but they often fail to account properly for incomplete and variable detection probabilities. We developed a technique that combines distance and double-observer sampling to estimate detection probabilities and effective area surveyed. We applied this paired-observer, variable circular-plot (POVCP) technique to point-count surveys (n = 753) conducted in closed-canopy forests of southeast Alaska. Distance data were analyzed for each species to model a detection probability for each observer and calculate an estimate of density. We then multiplied each observer's density estimates by a correction factor to adjust for detection probabilities <1 at plot center. We compared analytical results from four survey methods: single-observer fixed-radius (50-m) plot; single-observer, variable circular-plot (SOVCP); double-observer fixed-radius (50-m) plot; and POVCP. We examined differences in detection probabilities at plot center, effective area surveyed, and densities for five bird species: Pacific-slope Flycatcher (Empidonax difficilis), Winter Wren (Troglodytes troglodytes), Golden-crowned Kinglet (Regulus satrapa), Hermit Thrush (Catharus guttatus), and Townsend's Warbler (Dendroica townsendi). Average detection probabilities for paired observers increased ≈8% (SE = 2.9) for all species once estimates were corrected for birds missed at plot center. Density estimators of fixed-radius survey methods were likely negatively biased, because the key assumption of perfect detection was not met. Density estimates generated using SOVCP and POVCP were similar, but standard errors were much lower for the POVCP survey method. We recommend using POVCP when study objectives require precise estimates of density. Failure to account for differences in detection probabilities and effective area surveyed results in biased population estimators and, therefore, faulty inferences about the population in question. Estimaciones de la Densidad y de las Probabilidades de Detección a Partir de Muestreos Utilizando Conteos en Puntos: Una Combinación de Muestreos de Distancia y de Doble Observador



2020 ◽  
Vol 101 (5) ◽  
pp. 1289-1301
Author(s):  
Emma G Longden ◽  
Simon H Elwen ◽  
Barry McGovern ◽  
Bridget S James ◽  
Clare B Embling ◽  
...  

Abstract Robust abundance estimates of wild animal populations are needed to inform management policies and are often obtained through mark–recapture (MR) studies. Visual methods are commonly used, which limits data collection to daylight hours and good weather conditions. Passive acoustic monitoring offers an alternative, particularly if acoustic cues are naturally produced and individually distinctive. Here we investigate the potential of using individually distinctive signature whistles in a MR framework and evaluate different components of study design. We analyzed signature whistles of common bottlenose dolphins, Tursiops truncatus, using data collected from static acoustic monitoring devices deployed in Walvis Bay, Namibia. Signature whistle types (SWTs) were identified using a bout analysis approach (SIGnature IDentification [SIGID]—Janik et al. 2013). We investigated spatial variation in capture by comparing 21 synchronized recording days across four sites, and temporal variation from 125 recording days at one high-use site (Aphrodite Beach). Despite dolphin vocalizations (i.e., echolocation clicks) being detected at each site, SWTs were not detected at all sites and there was high variability in capture rates among sites where SWTs were detected (range 0–21 SWTs detected). At Aphrodite Beach, 53 SWTs were captured over 6 months and discovery curves showed an initial increase in newly detected SWTs, approaching asymptote during the fourth month. A Huggins closed capture model constructed from SWT capture histories at Aphrodite Beach estimated a population of 54–68 individuals from acoustic detection, which overlaps with the known population size (54–76 individuals—Elwen et al. 2019). This study demonstrates the potential power of using signature whistles as proxies for individual occurrence and in MR abundance estimation, but also highlights challenges in using this approach.





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