scholarly journals Insights on the historical biogeography of Philippine native pigs and its relationship with Continental domestic and wild boars

2021 ◽  
Author(s):  
John King Layos ◽  
Ronel Geromo ◽  
Dinah Espina ◽  
Masahide Nishibori
Keyword(s):  
Geographic Origin ◽  
The Philippines ◽  
Human Migration ◽  
Genetic Introgression ◽  
Effective Population ◽  
Loop Analysis ◽  
Wild Boars ◽  
Domestic Pigs ◽  
Sudden Decrease ◽  
Native Pigs

The Philippine archipelago was believed to have never been connected to the Asian continent, even during the severe Quaternary sea-level drops. As a result, the history of pig dispersal in the Philippines remains controversial and must have some anthropogenic origin associated with some human migration events. In this study, the context of origin, dispersal, and the level of genetic introgression in Philippine native pigs were deduced using mitochondrial DNA D-loop analysis altogether with domestic pigs and wild boars corresponding to their geographic origin. Results revealed a considerable genetic diversity (0.900±0.016), and a widespread Asian pig-ancestry (94.60%) were revealed in the phylogenetic analysis with admixed European pig-origin (5.10%) harboring various fractions of ancestry from Berkshire and Landrace. The close genetic connection between the continental wild boars and domestic pigs present in the Philippine pigs corroborates our hypothesis of a genetic signal that could potentially be associated with the recently reported multiple waves of human migrations to the Philippines during the last 50,000 years. The high frequency of haplotypes (54.08%) that collapsed in the D7 haplogroup represent an interesting challenge as its distribution does not coincide with the hypothesized migratory route of the Neolithic Austronesian-speaking populations. We detected the first Pacific Clade signature and ubiquitously distributed D2 haplotypes which postulate the legitimate dispersal of pigs associated with the multiple waves of human migrations involving the Philippines. The multimodal mismatch and neutrality test statistics both Fu’s Fs and Tajima’s D correlates the long stationary period of effective population size revealed in the Bayesian skyline plot. While the sudden decrease in population was consistent with the pronounced population bottleneck of Asian and European pigs during the interglacial periods of the Pleistocene.

scholarly journals Introgression of Eastern Chinese and Southern Chinese haplotypes contributes to the improvement of fertility and immunity in European modern pigs

GigaScience ◽  
2020 ◽  
Vol 9 (3) ◽  
Author(s):  
Hao Chen ◽  
Min Huang ◽  
Bin Yang ◽  
Zhongping Wu ◽  
Zheng Deng ◽  
...  
Keyword(s):  
Geographic Origin ◽  
Whole Genome Sequencing Data ◽  
Biological Functions ◽  
Sequencing Data ◽  
Phenotypic Characteristics ◽  
Large White ◽  
Wild Boars ◽  
Domestic Pigs ◽  
Southern Chinese ◽  
History Of

Abstract Background Pigs were domesticated independently from European and Asian wild boars nearly 10,000 years ago. Chinese indigenous pigs have been historically introduced to improve Europe local pigs. However, the geographic origin and biological functions of introgressed Chinese genes in modern European pig breeds remain largely unknown. Results Here we explored whole-genome sequencing data from 266 Eurasian wild boars and domestic pigs to produce a fine-scale map of introgression between French Large White (FLW) and Chinese pigs. We show that FLW pigs had historical admixture with both Southern Chinese (SCN) and Eastern Chinese (ECN) pigs ∼200–300 years ago. Moreover, a set of SCN haplotypes was shown to be beneficial for improving disease resistance and ECN haplotypes are favorable for improved reproductive performance in FLW pigs. In addition, we confirm human-mediated introgression events at the AHR locus, at which the haplotype of most likely ECN origin contributes to increased fertility of FLW pigs. Conclusions This study advances our understanding of the breeding history of global domestic pigs and highlights the importance of artificial introgression in the formation of phenotypic characteristics in domestic animals.

A 4000 year-old introduction of domestic pigs into the Philippine Archipelago: implications for understanding routes of human migration through Island Southeast Asia and Wallacea

Antiquity ◽  
2009 ◽  
Vol 83 (321) ◽  
pp. 687-695 ◽  
Author(s):  
Philip J. Piper ◽  
Hsiao-chun Hung ◽  
Fredeliza Z. Campos ◽  
Peter Bellwood ◽  
Rey Santiago
Keyword(s):  
Southeast Asia ◽  
The Philippines ◽  
Human Migration ◽  
Domestic Pig ◽  
Domestic Pigs ◽  
Island Southeast Asia ◽  
The Pacific ◽  
New Research

New research into the Neolithic of Island Southeast Asia is broadening the old models and making them more diverse, more human – more like history: people and animals can move through the islands in a multitude of ways. The domestic pig is an important tracker of Neolithic people and practice into the Pacific, and the authors address the controversial matter of whether domestic pigs first reached the islands of Southeast Asia from China via Taiwan or from the neighbouring Vietnamese peninsula. The DNA trajectory read from modern pigs favours Vietnam, but the authors have found well stratified domestic pig in the Philippines dated to c. 4000 BP and associated with cultural material of Taiwan. Thus the perils of relying only on DNA – but are these alternative or additional stories?

scholarly journals Seroprevalence of Hepatitis E Virus Infection among Blood Donors in Bulgaria

Viruses ◽  
2021 ◽  
Vol 13 (3) ◽  
pp. 492
Author(s):  
Magdalena Baymakova ◽  
Krasimira Terzieva ◽  
Rumen Popov ◽  
Elisaveta Grancharova ◽  
Todor Kundurzhiev ◽  
...  
Keyword(s):  
Virus Infection ◽  
Hepatitis E Virus ◽  
Blood Donors ◽  
Hepatitis E ◽  
Elisa Test ◽  
Blood Samples ◽  
Wild Boars ◽  
Domestic Pigs ◽  
Specific Questionnaire ◽  
Positive Results

Hepatitis E virus (HEV) infection is widespread among domestic pigs, industrial swine, and wild boars in Bulgaria. The aim of the current research was to present the HEV seroprevalence among blood donors in Bulgaria. In the present study, 555 blood donors (479 males and 76 females) were enrolled from five districts in the country (Shumen, Pleven, Stara Zagora, Plovdiv, and Sofia districts). All blood samples were tested for anti-HEV IgG using the recomWell HEV IgG ELISA test (Mikrogen GmbH, Neuried, Germany). Each participating donor completed a short, structured, and specific questionnaire to document data on the current study. Anti-HEV IgG positive results were detected in 144 (25.9%) blood donors, including 129 (26.9%) males and 15 (19.7%) females. The established HEV seropositivity was 28.8% (23/80) in Shumen district, 23.2% (22/95) in Pleven district, 27.1% (38/140) in Stara Zagora district, 27.5% (44/160) in Plovdiv district, and 21.3% (17/80) in Sofia district. A high HEV seroprevalence was found for persons who declared that they were general hunters (48.7%; 19/39; p = 0.001) and hunters of wild boars (51.6%; 16/31; p = 0.001). We present the first seroprevalence rates of HEV infection in blood donors from Bulgaria. The results of our research showed high HEV seropositivity among blood donors.

scholarly journals Reply to 'On genetic differentiation between domestic pigs and Tibetan wild boars'

2015 ◽  
Vol 47 (3) ◽  
pp. 192-192
Author(s):  
Mingzhou Li ◽  
Carol K L Yeung ◽  
Ying Li ◽  
Shilin Tian ◽  
Xuewei Li ◽  
...  
Keyword(s):  
Genetic Differentiation ◽  
Wild Boars ◽  
Domestic Pigs

Molecular phylogenetic relationships of Metastrongylus nematodes with emphasis on specimens from domestic pigs in Vietnam

2021 ◽  
Vol 95 ◽  
Author(s):  
N.V. Tuyen ◽  
N.T.K. Lan ◽  
P.N. Doanh
Keyword(s):  
Phylogenetic Relationships ◽  
Sequence Data ◽  
Molecular Data ◽  
Global Scale ◽  
Single Infection ◽  
Parasitic Nematodes ◽  
Nucleotide Sequence Data ◽  
Wild Boars ◽  
Domestic Pigs ◽  
Molecular Phylogenetic

Abstract Lungworms of the genus Metastrongylus are parasitic nematodes in the respiratory tract of swine. Although they infect both wild boars and domestic pigs, studies on Metastrongylus infections in wild boars in Europe, the Americas and Africa are numerous, while those in domestic pigs are few. There are several studies analysing the molecular phylogenetic relationships of few individual Metastrongylus species with other nematode taxa, but there are no studies on the phylogenetic relationships of species within the genus Metastrongylus. In Southeast Asia, reports on swine lungworms are extremely scarce and do not include any nucleotide sequence data. Therefore, the aim of the present study is to survey Metastrongylus infection in domestic pigs raised in Dien Bien Province, Northern Vietnam, and to analyse the molecular phylogenetic relationships of Metastrongylus species. Based on morphological and molecular data, we identified two species: Metastrongylus apri and Metastrongylus pudendotectus. The prevalence of the former species was found to be significantly higher than the latter one (24.1% vs. 2.3%). We observed pigs exhibiting a coinfection with the two lungworm species or a single infection with only M. apri. However, we did not observe any pigs being infected with just M. pudendotectus. Vietnamese Metastrongylus specimens showed slight morphological and molecular differences compared to those from other countries. The molecular analyses revealed a close genetic relationship between M. apri and Metastrongylus salmi, while both these species were far distant from M. pudendotectus. The present study highlights the needs for further studies to clarify the morphological features and ecological and phylogenetic relationships of Metastrongylus species at the global scale.

scholarly journals Copy Number and Prevalence of Porcine Endogenous Retroviruses (PERVs) in German Wild Boars

Viruses ◽  
2020 ◽  
Vol 12 (4) ◽  
pp. 419
Author(s):  
Luise Krüger ◽  
Milena Stillfried ◽  
Carolin Prinz ◽  
Vanessa Schröder ◽  
Lena Katharina Neubert ◽  
...  
Keyword(s):  
Wild Boar ◽  
Copy Number ◽  
Digital Pcr ◽  
Endogenous Retroviruses ◽  
Wild Boars ◽  
Domestic Pigs ◽  
Copy Numbers ◽  
Cellular Genes ◽  
Porcine Endogenous Retroviruses ◽  
Different Populations

Porcine endogenous retroviruses (PERVs) are integrated in the genome of pigs and are transmitted like cellular genes from parents to the offspring. Whereas PERV-A and PERV-B are present in all pigs, PERV-C was found to be in many, but not all pigs. When PERV-C is present, recombination with PERV-A may happen and the PERV-A/C recombinants are characterized by a high replication rate. Until now, nothing has been known about the copy number of PERVs in wild boars and little is known about the prevalence of the phylogenetically youngest PERV-C in ancient wild boars. Here we investigated for the first time the copy number of PERVs in different populations of wild boars in and around Berlin using droplet digital PCR. Copy numbers between 3 and 69 per genome have been measured. A lower number but a higher variability was found compared to domestic pigs, including minipigs reported earlier (Fiebig et al., Xenotransplantation, 2018). The wild boar populations differed genetically and had been isolated during the existence of the Berlin wall. Despite this, the variations in copy number were larger in a single population compared to the differences between the populations. PERV-C was found in all 92 analyzed animals. Differences in the copy number of PERV in different organs of a single wild boar indicate that PERVs are also active in wild boars, replicating and infecting new cells as has been shown in domestic pigs.

scholarly journals Simultaneous estimation of seasonal population density, habitat preference and catchability of wild boars based on camera data and harvest records

2020 ◽  
Vol 7 (8) ◽  
pp. 200579
Author(s):  
Yuichi Yokoyama ◽  
Yoshihiro Nakashima ◽  
Gota Yajima ◽  
Tadashi Miyashita
Keyword(s):  
Population Density ◽  
Habitat Preference ◽  
Population Control ◽  
Individual Recognition ◽  
Spatial Scales ◽  
Simultaneous Estimation ◽  
Effective Population ◽  
Time Model ◽  
Wild Mammals ◽  
Wild Boars

Analyses of life history and population dynamics are essential for effective population control of wild mammals. We developed a model for the simultaneous estimation of seasonal changes in three parameters—population density, habitat preference and trap catchability of target animals—based on camera-trapping data and harvest records. The random encounter and staying time model, with no need for individual recognition, is the core component of the model—by combining this model with the catch-effort model, we estimated density at broad spatial scales and catchability by traps. Here, the wild boar population in central Japan was evaluated as a target population. We found that the estimated population density increased after the birth period and then decreased until the next birth period, mainly due to harvesting. Habitat preference changed seasonally, but forests having abandoned fields nearby were generally preferred throughout the season. These patterns can be explained by patterns of food availability and resting or nesting sites. Catchability by traps also changed seasonally, with relatively high values in the winter, which probably reflected changes in the attractiveness of the trap bait due to activity changes in response to food scarcity. Based on these results, we proposed an effective trapping strategy for wild boars, and discussed the applicability of our model to more general conservation and management issues.

scholarly journals Genetic evidence for introgression between domestic pigs and wild boars (Sus scrofa) in Belgium and Luxembourg: a comparative approach with multiple marker systems

2013 ◽  
Vol 110 (1) ◽  
pp. 104-115 ◽  
Author(s):  
Alain C. Frantz ◽  
Frank E. Zachos ◽  
Julia Kirschning ◽  
Sandra Cellina ◽  
Sabine Bertouille ◽  
...  
Keyword(s):  
Sus Scrofa ◽  
Genetic Evidence ◽  
Comparative Approach ◽  
Wild Boars ◽  
Domestic Pigs

Trichinella nativa in sylvatic wild boars

1999 ◽  
Vol 73 (1) ◽  
pp. 87-89 ◽  
Author(s):  
E. Pozio ◽  
C.M.O. Kapel
Keyword(s):  
Sus Scrofa ◽  
Trichinella Spiralis ◽  
Temperature Tolerance ◽  
Biological Characteristics ◽  
The Other ◽  
Wild Boars ◽  
Domestic Pigs ◽  
Trichinella Nativa

Of 17 Trichinella isolates from domestic pigs and wild boars (Sus scrofa) in regions where Trichinella nativa is widespread among sylvatic animals, two wild boars from Estonia were found to be naturally infected with this Trichinella species. The other 15 animals were infected with Trichinella spiralis. Trichinella nativa is tolerant to freezing when in the muscles of carnivores. The biological characteristics and temperature tolerance of this species in swine need to be further investigated if pork is certified for consumption following freezing.

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