scholarly journals Differential timing for glucose assimilation in Prochlorococcus and coexistent microbial populations at the North Pacific Subtropical Gyre

2021 ◽  
Author(s):  
Maria del Carmen Munoz-Marin ◽  
Solange Duhamel ◽  
Karin M. Bjorkman ◽  
Jonathan D. Magasin ◽  
David M. Karl ◽  
...  

The marine cyanobacterium Prochlorococcus can utilize glucose as a source of carbon. However, the relative importance of inorganic and organic carbon assimilation and the timing of glucose assimilation are still poorly understood in these numerically dominant cyanobacteria. Here we investigated whole microbial community and group-specific primary production and glucose assimilation, using incubations with radioisotopes combined with flow cytometry cell sorting. We also studied changes in the microbial community structure in response to glucose enrichments and analyzed the transcription of Prochlorocccus genes involved in carbon metabolism and photosynthesis. Our results showed a circadian rhythm for glucose assimilation in Prochlorococcus, with maximum assimilation during the midday and minimum at midnight, which was different compared with that of the total microbial community. This suggests that rhythms in glucose assimilation have been adapted in Prochlorococcus to couple the active transport to photosynthetic light reactions producing energy, and possibly to avoid competition from the rest of the microbial community. High-light Prochlorococcus strains showed most transcriptional changes upon glucose enrichment. Pathways involved in glucose metabolism as the pentose phosphate, the Entner-Dudoroff, glycolysis, respiration and glucose transport showed an increase in the transcript level. A few genes of the low-light strains showed opposite changes, suggesting that glucose assimilation has been subjected to diversification along the Prochlorococcus evolution.

2009 ◽  
Vol 75 (16) ◽  
pp. 5345-5355 ◽  
Author(s):  
Konstantinos T. Konstantinidis ◽  
Jennifer Braff ◽  
David M. Karl ◽  
Edward F. DeLong

ABSTRACT The deep sea (water depth of >2,000 m) represents the largest biome on Earth. Yet relatively little is known about its microbial community's structure, function, and adaptation to the cold and deep biosphere. To provide further genomic insights into deep-sea planktonic microbes, we sequenced a total of ∼200 Mbp of a random whole-genome shotgun (WGS) library from a microbial community residing at a depth of 4,000 m at Station ALOHA in the Pacific Ocean and compared it to other available WGS sequence data from surface and deep waters. Our analyses indicated that the deep-sea lifestyle is likely facilitated by a collection of very subtle adaptations, as opposed to dramatic alterations of gene content or structure. These adaptations appear to include higher metabolic versatility and genomic plasticity to cope with the sparse and sporadic energy resources available, a preference for hydrophobic and smaller-volume amino acids in protein sequences, unique proteins not found in surface-dwelling species, and adaptations at the gene expression level. The deep-sea community is also characterized by a larger average genome size and a higher content of “selfish” genetic elements, such as transposases and prophages, whose propagation is apparently favored by more relaxed purifying (negative) selection in deeper waters.


2015 ◽  
Vol 75 (2) ◽  
pp. 103-116 ◽  
Author(s):  
DA del Valle ◽  
S Martínez-García ◽  
SA Sañudo-Wilhelmy ◽  
RP Kiene ◽  
DM Karl

Author(s):  
Matthew J. Harke ◽  
Kyle R. Frischkorn ◽  
Gwenn M. M. Hennon ◽  
Sheean T. Haley ◽  
Benedetto Barone ◽  
...  

2020 ◽  
Author(s):  
Sara Ferron ◽  
Benedetto Barone ◽  
Matthew J Church ◽  
Angelicque E. White ◽  
David M. Karl

Abstract Recent evidence shows that the North Pacific subtropical gyre, the Kuroshio Extension (KE) and Oyashio Extension (OE) fronts have moved poleward in the past few decades. However, changes of the North Pacific Subtropical Fronts (STFs), anchored by the North Pacific subtropical countercurrent in the southern subtropical gyre, remain to be quantified. By synthesizing observations, reanalysis, and eddy-resolving ocean hindcasts, we show that the STFs, especially their eastern part, weakened (20%±5%) and moved poleward (1.6°±0.4°) from 1980 to 2018. Changes of the STFs are modified by mode waters to the north. We find that the central mode water (CMW) (180°-160°W) shows most significant weakening (18%±7%) and poleward shifting (2.4°±0.9°) trends, while the eastern part of the subtropical mode water (STMW) (160°E-180°) has similar but moderate changes (10% ± 8%; 0.9°±0.4°). Trends of the western part of the STMW (140°E-160°E) are not evident. The weakening and poleward shifting of mode waters and STFs are enhanced to the east and are mainly associated with changes of the northern deep mixed layers and outcrop lines—which have a growing northward shift as they elongate to the east. The eastern deep mixed layer shows the largest shallowing trend, where the subduction rate also decreases the most. The mixed layer and outcrop line changes are strongly coupled with the northward migration of the North Pacific subtropical gyre and the KE/OE jets as a result of the poleward expanded Hadley cell, indicating that the KE/OE fronts, mode waters, and STFs change as a whole system.


2013 ◽  
Vol 53 (supplement1-2) ◽  
pp. S203
Author(s):  
Mathias Girault ◽  
Hisayuki Arakawa ◽  
Gerald Gregori ◽  
Fuminori Hashihama ◽  
Hyonchol Kim ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document