biPACT: a method for three-dimensional visualization of mouse spinal cord circuits of long segments with high resolution
Background: The spatial complexity of neuronal circuits in the central nervous system is an hurdle in understanding and treating brain and spinal cord injuries. Although several methods have recently been developed to render the spinal cord transparent and label specific neural circuits, three-dimensional visualization of long segments of spinal cord with high resolution remains challenging. New Method: We have established a method that combines tissue staining of neuronal tracts traced with biotinylated dextran amine (BDA) and a modified passive clarity clearing protocol. Results: BDA was injected into the unilateral sensorimotor cortex of a mouse model of thoracic spinal cord contusional injury. Ten days later, the spinal cord was removed and immersed first in staining solution and then in hydrogel solution. The spinal cord was then sealed with a syringe and underwent gelation process, followed by clearing with clearing solution and observation solution. Staining and clearing took a total of two weeks. The samples were observed with a lightsheet microscope, and three-dimensional reconstruction was performed with ImageJ software. With the lightsheet microscope, high resolution-images comparable with tissue sections were obtained continuously and circumferentially. By tiling, it was possible to obtain high-resolution images of long segments of the spinal cord, in which each fiber could be traced. The tissue could be easily re-stained in case of fading. Comparison with Existing Methods: The present method does not require special equipment, can label specific circuits without genetic technology, and re-staining rounds can be easily implemented. It enables to visualize specific neural circuit of long spinal cord segments with high resolution up to individual nerve fiber. Conclusions: By using simple neural labeling, staining, and transparency methods, it was possible to acquire a wide range of high-resolution three-dimensional images of the spinal cord.