scholarly journals Ecological Network assembly: how the regional metaweb influences local food webs

2018 ◽  
Author(s):  
Leonardo A. Saravia ◽  
Tomás I. Marina ◽  
Marleen De Troch ◽  
Fernando R. Momo
Keyword(s):  
Food Web ◽  
Food Webs ◽  
Local Food ◽  
Weddell Sea ◽  
List Type ◽  
Assembly Model ◽  
Ecological Stability ◽  
Food Web Structure ◽  
Potter Cove ◽  
Global Properties

AbstractLocal food webs can be studied as the realisation of a sequence of colonising and extinction events, where a regional pool of species — called the metaweb— acts as a source for new species. Food webs are thus the result of assembly processes that are influenced by migration, habitat filtering, stochastic factors, and dynamical constraints. Therefore, we expect their structure to reflect the action of these influences.We compared the structure of empirical local food webs to (1) a metaweb, (2) randomly-constructed webs, and (3) webs resulting from an assembly model. The assembly model had no population dynamics but simply required that consumer species have at least one prey present in the local web. We compared global properties, network sub-structures—motifs— and topological roles that are node-level properties. We hypothesised that the structure of empirical food webs should differ from other webs in a way that reflected dynamical stability and other local constraints. Three data-sets were used: (1) the marine Antarctic metaweb, built using a dietary database; (2) the Weddell Sea local food web; and (3) the Potter Cove local food web.Contrary to our expectation, we found that, while most network global properties of empirical webs were different from random webs, there were almost no differences between empirical webs and those resulting from the assembly model. Further, while empirical webs showed different motif representations compared to the assembly model, these were not motifs associated with increased stability. Species’ topological roles showed differences between the metaweb and local food webs that were not explained by the assembly model, suggesting that species in empirical webs are selected by habitat or dispersal limitations.Our results suggest that there is not a strong dynamical restriction upon food web structure that operates at local scales. Instead, the structure of local webs is inherited from the metaweb with modifications imposed by local habitats.Recently, it has been found in competitive and mutualistic networks that structures that are often attributed as causes or consequences of ecological stability are probably a by-product of the assembly processes (i.e. spandrels). We extended these results to trophic networks suggesting that this could be a more general phenomenon.

scholarly journals NetworkExtinction: an R package to explore the propagation of extinctions through complex ecological networks

2020 ◽  
Author(s):  
M. Isidora Ávila-Thieme ◽  
Derek Corcoran ◽  
Simón P. Castillo ◽  
Fernanda S. Valdovinos ◽  
Sergio A. Navarrete ◽  
...  
Keyword(s):  
Food Web ◽  
Food Webs ◽  
Degree Distribution ◽  
Null Model ◽  
Biodiversity Loss ◽  
R Package ◽  
List Type ◽  
Food Web Structure ◽  
Species Extinction ◽  
Species Extinctions

AbstractBiodiversity loss is one of the current drivers of global change with an acute impact on community structure. Different measures and tools (e.g., simulations of extinction events) have been developed to analyze the structure of ecological systems and their stability under biodiversity loss, especially in complex settings with multiple interacting species, such as food webs. However, there remains the need for tools that enable a quick assessment of the ensuing impacts on food webs structure due to species extinction. Here, we develop an R package to explore the propagation of species extinctions through food webs, measured as secondary extinctions, according to user-defined node removal sequences.In the NetworkExtinction package, we seek the integration between theory and computational simulations by developing six functions to analyze and visualize the structure and robustness of food webs represented as binary adjacency matrices. Three functions simulate the sequential extinction of species; a fourth function compares food web metrics between random and non-random extinction sequences; a fifth function visualizes the change in a given network metric along with the steps of sequential species extinction; a sixth function allows the user to fit and visualize the degree distribution of the network, fitting linear and non-linear regressions. We illustrate the package’s use and its outputs by analysing a Chilean coastal marine food web.By using the NetworkExtinction package, the user can estimate the food web robustness after performing species’ extinction routines based on several algorithms. Moreover, the user can compare the number of simulated secondary extinctions against a null model of random extinctions. The visualizations allow graphing topological indexes that the deletion sequences functions calculate after each removal step. Finally, the user can fit the degree distribution of the food web.The NetworkExtinction R package is a compact and easy-to-use package to visualize and assess the food web structure (degree distribution) and robustness to different sequences of species loss. Therefore, this package is particularly useful to evaluate the ecosystem response to anthropogenic and environmental perturbations that produce non-random species extinctions. In that way, it also allows us to assess the contribution of central nodes to food webs stability.

scholarly journals The more food webs change, the more they stay the same

2009 ◽  
Vol 364 (1524) ◽  
pp. 1789-1801 ◽  
Author(s):  
Kevin Shear McCann ◽  
Neil Rooney
Keyword(s):  
Food Web ◽  
Food Webs ◽  
Temporal Variability ◽  
Spatial And Temporal Variability ◽  
Scale Invariant ◽  
Food Web Structure ◽  
Behavioural Responses ◽  
Web Structure ◽  
Food Web Ecology ◽  
Food Web Theory

Here, we synthesize a number of recent empirical and theoretical papers to argue that food-web dynamics are characterized by high amounts of spatial and temporal variability and that organisms respond predictably, via behaviour, to these changing conditions. Such behavioural responses on the landscape drive a highly adaptive food-web structure in space and time. Empirical evidence suggests that underlying attributes of food webs are potentially scale-invariant such that food webs are characterized by hump-shaped trophic structures with fast and slow pathways that repeat at different resolutions within the food web. We place these empirical patterns within the context of recent food-web theory to show that adaptable food-web structure confers stability to an assemblage of interacting organisms in a variable world. Finally, we show that recent food-web analyses agree with two of the major predictions of this theory. We argue that the next major frontier in food-web theory and applied food-web ecology must consider the influence of variability on food-web structure.

scholarly journals The use of DNA barcodes in food web construction—terrestrial and aquatic ecologists unite!

Genome ◽  
2016 ◽  
Vol 59 (9) ◽  
pp. 603-628 ◽  
Author(s):  
Tomas Roslin ◽  
Sanna Majaneva
Keyword(s):  
Food Web ◽  
Food Webs ◽  
Taxonomic Resolution ◽  
Dna Barcodes ◽  
Food Web Structure ◽  
Web Studies ◽  
Web Structure ◽  
Asking Questions ◽  
Web Construction ◽  
Interaction Webs

By depicting who eats whom, food webs offer descriptions of how groupings in nature (typically species or populations) are linked to each other. For asking questions on how food webs are built and work, we need descriptions of food webs at different levels of resolution. DNA techniques provide opportunities for highly resolved webs. In this paper, we offer an exposé of how DNA-based techniques, and DNA barcodes in particular, have recently been used to construct food web structure in both terrestrial and aquatic systems. We highlight how such techniques can be applied to simultaneously improve the taxonomic resolution of the nodes of the web (i.e., the species), and the links between them (i.e., who eats whom). We end by proposing how DNA barcodes and DNA information may allow new approaches to the construction of larger interaction webs, and overcome some hurdles to achieving adequate sample size. Most importantly, we propose that the joint adoption and development of these techniques may serve to unite approaches to food web studies in aquatic and terrestrial systems—revealing the extent to which food webs in these environments are structured similarly to or differently from each other, and how they are linked by dispersal.

scholarly journals Untangling the roles of parasites in food webs with generative network models

2015 ◽  
Author(s):  
Abigail Z. Jacobs ◽  
Jennifer A. Dunne ◽  
Cristopher Moore ◽  
Aaron Clauset
Keyword(s):  
Food Web ◽  
Food Webs ◽  
Statistical Physics ◽  
Network Models ◽  
Food Web Structure ◽  
Free Living ◽  
Web Structure ◽  
Living Species ◽  
Parasitic Interactions ◽  
The Impact

Food webs represent the set of consumer-resource interactions among a set of species that co-occur in a habitat, but most food web studies have omitted parasites and their interactions. Recent studies have provided conflicting evidence on whether including parasites changes food web structure, with some suggesting that parasitic interactions are structurally distinct from those among free-living species while others claim the opposite. Here, we describe a principled method for understanding food web structure that combines an efficient optimization algorithm from statistical physics called parallel tempering with a probabilistic generalization of the empirically well-supported food web niche model. This generative model approach allows us to rigorously estimate the degree to which interactions that involve parasites are statistically distinguishable from interactions among free-living species, whether parasite niches behave similarly to free-living niches, and the degree to which existing hypotheses about food web structure are naturally recovered. We apply this method to the well-studied Flensburg Fjord food web and show that while predation on parasites, concomitant predation of parasites, and parasitic intraguild trophic interactions are largely indistinguishable from free-living predation interactions, parasite-host interactions are different. These results provide a powerful new tool for evaluating the impact of classes of species and interactions on food web structure to shed new light on the roles of parasites in food webs.

scholarly journals Mesoscale variations in the assemblage structure and trophodynamics of mesozooplankton communities of the Adriatic basin (Mediterranean Sea)

2021 ◽  
Author(s):  
Emanuela Fanelli ◽  
Samuele Menicucci ◽  
Sara Malavolti ◽  
Andrea De Felice ◽  
Iole Leonori
Keyword(s):  
Food Web ◽  
Food Webs ◽  
Mediterranean Sea ◽  
Environmental Variables ◽  
Complex Structure ◽  
Assemblage Structure ◽  
Trophic Levels ◽  
Ecosystem Functions ◽  
Food Web Structure ◽  
Adriatic Basin

Abstract. Zooplankton are critical to the functioning of ocean food webs because of their utter abundance and vital ecosystem roles. Zooplankton communities are highly diverse and thus perform a variety of ecosystem functions, thus changes in their community or food web structure may provide evidence of ecosystem alteration. Assemblage structure and trophodynamics of mesozooplantkon communities were examined across the Adriatic basin, the northernmost and most productive basin of the Mediterranean Sea. Samples were collected in June–July 2019 along coast-offshore transects covering the whole western Adriatic side, consistently environmental variables were also recorded. Results showed a clear separation between samples from the northern-central Adriatic and the southern ones, with a further segregation, although less clear, of inshore vs. off-shore stations, the latter mostly dominated in the central and southern stations by gelatinous plankton. Such patterns were mainly driven by chlorophyll-a concentration (as a proxy of primary production) for northern-central stations, i.e. closer to the Po river input, and by temperature and salinity, for southern ones, with the DistLM model explaining 46 % of total variance. The analysis of stable isotopes of nitrogen and carbon allowed to identify a complex food web characterized by 3 trophic levels from herbivores to carnivores, passing through the mixed feeding behavior of omnivores, shifting from phytoplankton/detritus ingestion to microzooplankton. Trophic structure also spatially varied according to sub-area, with the northern-central sub-areas differing from each other and from the southern stations. Our results highlighted the importance of environmental variables as drivers of zooplanktonic communities and the complex structure of their food webs. Disentangling and considering such complexity is crucial to generate realistic predictions on the functioning of aquatic ecosystems, especially in high productive and, at the same time, overexploited area such as the Adriatic Sea.

scholarly journals Phylogeny versus body size as determinants of food web structure

2012 ◽  
Vol 279 (1741) ◽  
pp. 3291-3297 ◽  
Author(s):  
Russell E. Naisbit ◽  
Rudolf P. Rohr ◽  
Axel G. Rossberg ◽  
Patrik Kehrli ◽  
Louis-Félix Bersier
Keyword(s):  
Body Size ◽  
Food Web ◽  
Food Webs ◽  
Phylogenetic Signal ◽  
Theoretical Models ◽  
Conservation Priorities ◽  
Food Web Structure ◽  
Web Architecture ◽  
Species Overlap ◽  
Using Data

Food webs are the complex networks of trophic interactions that stoke the metabolic fires of life. To understand what structures these interactions in natural communities, ecologists have developed simple models to capture their main architectural features. However, apparently realistic food webs can be generated by models invoking either predator–prey body-size hierarchies or evolutionary constraints as structuring mechanisms. As a result, this approach has not conclusively revealed which factors are the most important. Here we cut to the heart of this debate by directly comparing the influence of phylogeny and body size on food web architecture. Using data from 13 food webs compiled by direct observation, we confirm the importance of both factors. Nevertheless, phylogeny dominates in most networks. Moreover, path analysis reveals that the size-independent direct effect of phylogeny on trophic structure typically outweighs the indirect effect that could be captured by considering body size alone. Furthermore, the phylogenetic signal is asymmetric: closely related species overlap in their set of consumers far more than in their set of resources. This is at odds with several food web models, which take only the view-point of consumers when assigning interactions. The echo of evolutionary history clearly resonates through current food webs, with implications for our theoretical models and conservation priorities.

Surface water connectivity controls fish food web structure and complexity across local- and meta-food webs in Arctic Coastal Plain lakes

Food Webs ◽  
2019 ◽  
Vol 21 ◽  
pp. e00123 ◽  
Author(s):  
Sarah M. Laske ◽  
Amanda E. Rosenberger ◽  
Mark S. Wipfli ◽  
Christian E. Zimmerman
Keyword(s):  
Surface Water ◽  
Food Web ◽  
Food Webs ◽  
Coastal Plain ◽  
Food Web Structure ◽  
Fish Food ◽  
Web Structure ◽  
Arctic Coastal Plain

Resolving Food-Web Structure

2020 ◽  
Vol 51 (1) ◽  
pp. 55-80
Author(s):  
Robert M. Pringle ◽  
Matthew C. Hutchinson
Keyword(s):  
Food Web ◽  
Food Webs ◽  
Trophic Interactions ◽  
Sampling Methods ◽  
Taxonomic Resolution ◽  
Major Focus ◽  
Web Data ◽  
Food Web Structure ◽  
Web Structure ◽  
Abundant Evidence

Food webs are a major focus and organizing theme of ecology, but the data used to assemble them are deficient. Early debates over food-web data focused on taxonomic resolution and completeness, lack of which had produced spurious inferences. Recent data are widely believed to be much better and are used extensively in theoretical and meta-analytic research on network ecology. Confidence in these data rests on the assumptions ( a) that empiricists correctly identified consumers and their foods and ( b) that sampling methods were adequate to detect a near-comprehensive fraction of the trophic interactions between species. Abundant evidence indicates that these assumptions are often invalid, suggesting that most topological food-web data may remain unreliable for inferences about network structure and underlying ecological and evolutionary processes. Morphologically cryptic species are ubiquitous across taxa and regions, and many trophic interactions routinely evade detection by conventional methods. Molecular methods have diagnosed the severity of these problems and are a necessary part of the cure.

Decrease in diatom dominance at lower Si:N ratios alters plankton food webs

2020 ◽  
Vol 42 (4) ◽  
pp. 411-424
Author(s):  
Kriste Makareviciute-Fichtner ◽  
Birte Matthiessen ◽  
Heike K Lotze ◽  
Ulrich Sommer
Keyword(s):  
Food Web ◽  
Food Webs ◽  
Phytoplankton Community ◽  
Plankton Community ◽  
Trophic Levels ◽  
Food Web Structure ◽  
Planktonic Food ◽  
Web Structure ◽  
Copepod Grazing ◽  
Important Food Source

Abstract Many coastal oceans experience not only increased loads of nutrients but also changes in the stoichiometry of nutrient supply. Excess supply of nitrogen and stable or decreased supply of silicon lower silicon to nitrogen (Si:N) ratios, which may decrease diatom proportion in phytoplankton. To examine how Si:N ratios affect plankton community composition and food web structure, we performed a mesocosm experiment where we manipulated Si:N ratios and copepod abundance in a Baltic Sea plankton community. In high Si:N treatments, diatoms dominated. Some of them were likely spared from grazing unexpectedly resulting in higher diatom biomass under high copepod grazing. With declining Si:N ratios, dinoflagellates became more abundant under low and picoplankton under high copepod grazing. This altered plankton food web structure: under high Si:N ratios, edible diatoms were directly accessible food for copepods, while under low Si:N ratios, microzooplankton and phago-mixotrophs (mixoplankton) were a more important food source for mesograzers. The response of copepods to changes in the phytoplankton community was complex and copepod density-dependent. We suggest that declining Si:N ratios favor microzoo- and mixoplankton leading to increased complexity of planktonic food webs. Consequences on higher trophic levels will, however, likely be moderated by edibility, nutritional value or toxicity of dominant phytoplankton species.

scholarly journals Warming and nitrogen affect size structuring and density dependence in a host–parasitoid food web

2012 ◽  
Vol 367 (1605) ◽  
pp. 3033-3041 ◽  
Author(s):  
Claudio de Sassi ◽  
Phillip P. A. Staniczenko ◽  
Jason M. Tylianakis
Keyword(s):  
Body Size ◽  
Food Web ◽  
Food Webs ◽  
Global Changes ◽  
Ecological Communities ◽  
Food Web Structure ◽  
Bottom Up ◽  
Mediated Effects ◽  
Web Structure ◽  
Nitrogen Treatments

Body size is a major factor constraining the trophic structure and functioning of ecological communities. Food webs are known to respond to changes in basal resource abundance, and climate change can initiate compounding bottom-up effects on food-web structure through altered resource availability and quality. However, the effects of climate and co-occurring global changes, such as nitrogen deposition, on the density and size relationships between resources and consumers are unknown, particularly in host–parasitoid food webs, where size structuring is less apparent. We use a Bayesian modelling approach to explore the role of consumer and resource density and body size on host–parasitoid food webs assembled from a field experiment with factorial warming and nitrogen treatments. We show that the treatments increased resource (host) availability and quality (size), leading to measureable changes in parasitoid feeding behaviour. Parasitoids interacted less evenly within their host range and increasingly focused on abundant and high-quality (i.e. larger) hosts. In summary, we present evidence that climate-mediated bottom-up effects can significantly alter food-web structure through both density- and trait-mediated effects.

Sign in / Sign up

Export Citation Format

Share Document