scholarly journals Establishing the baseline for using plankton as biosensor

2019 ◽  
Author(s):  
Vito P. Pastore ◽  
Thomas Zimmermann ◽  
Sujoy K. Biswas ◽  
Simone Bianco

ABSTRACTPlankton is at the bottom of the food chain. Microscopic phytoplankton account for about 50% of all photosynthesis on Earth, corresponding to 50 billion tons of carbon each year, or about 125 billion tonnes of sugar[1]. Plankton is also the food for most species of fish, and therefore it represents the backbone of the aquatic environment. Thus, monitoring plankton is paramount to infer potential dangerous changes to the ecosystem. In this work we use a collection of plankton species extracted from a large dataset of images from the Woods Hole Oceanographic Institution (WHOI), to establish a basic set of morphological features for supporting the use of plankton as a biosensor. Using a perturbation detection approach, we show that it is possible to detect deviation from the average space of features for each species of plankton microorganisms, that we propose could be related to environmental threat or perturbations. Such an approach can open the way for the development of an automatic Artificial Intelligence (AI) based system for using plankton as biosensor.

2021 ◽  
Vol 36 (Supplement_1) ◽  
Author(s):  
S Diakiw ◽  
M VerMilyea ◽  
J M M Hall ◽  
K Sorby ◽  
T Nguyen ◽  
...  

Abstract Study question Do artificial intelligence (AI) models used to assess embryo viability (based on pregnancy outcomes) also correlate with known embryo quality measures such as Gardner score? Summary answer An AI for embryo viability assessment also correlated with Gardner score, further substantiating the use of AI for assessment and selection of good quality embryos. What is known already The Gardner score consists of three separate components of embryo morphology that are graded individually, then combined to give a final score describing Day 5 embryo (blastocyst) quality. Evidence suggests the Gardner score has some correlation with clinical pregnancy. We hypothesized that an AI model trained to evaluate likelihood of clinical pregnancy based on fetal heartbeat (in clinical use globally) would also correlate with components of the Gardner score itself. We also compared the ability of the AI and Gardner score to predict pregnancy outcomes. Study design, size, duration This study involved analysis of a prospectively collected dataset of single static Day 5 embryo images with associated Gardner scores and AI viability scores. The dataset comprised time-lapse images of 1,485 embryos (EmbryoScope) from 638 patients treated at a single in vitro fertilization (IVF) clinic between November 2019 and December 2020. The AI model was not trained on data from this clinic. Participants/materials, setting, methods Average patient age was 35.4 years. Embryologists manually graded each embryo using the Gardner method, then subsequently used the AI to obtain a score between 0 (predicted non-viable, unlikely to lead to a pregnancy) and 10 (predicted viable, likely to lead to a pregnancy). Correlation between the AI viability score and Gardner score was then assessed. Main results and the role of chance The average AI score was significantly correlated with the three components of the Gardner score: expansion grade, inner cell mass (ICM) grade, and trophectoderm grade. Average AI score generally increased with advancing blastocyst developmental stage. Blastocysts with expansion grades of ≥ 3 are generally considered suitable for transfer. This study showed that embryos with expansion grade 3 had lower AI scores than those with grades 4-6, consistent with a reduced pregnancy rate. AI correlation with trophectoderm grade was more significant than with ICM grade, consistent with studies demonstrating that trophectoderm grade is more important than ICM in determining clinical pregnancy likelihood. The AI predicted Gardner scores of ≥ 2BB with an accuracy of 71.7% (sensitivity 75.1%, specificity 45.9%), and an AUC of 0.68. However, when used to predict pregnancy outcome, the AI performed 27.9% better than the Gardner score (accuracies of 49.8% and 39.0% respectively). Even though the AI was highly correlated with the Gardner score, the improved efficacy for predicting pregnancy suggests that a) the AI provides an advantage in standardization of scoring over the manual and subjective Gardner method, and b) the AI is likely identifying and evaluating morphological features of embryo quality that are not captured by the Gardner method. Limitations, reasons for caution The Gardner score is not a linear score, creating challenges with setting a suitable threshold relating to the prediction of pregnancy. The 2BB treshold was chosen based on literature (Munné et al 2019) and verified by experienced embryologists. This correlative study may also require additional confirmatory studies on independent datasets. Wider implications of the findings The correlation between AI scores and known features of embryo quality (Gardner score) substantiates the use of the AI for embryo assessment. The AI score provides further insight into components of the Gardner score, and may detect morphological features related to clinical pregnancy beyond those evaluated by the Gardner method. Trial registration number Not applicable


Author(s):  
Hussein Taha Hussein ◽  
Mohamed Ammar ◽  
Mohamed Moustafa Hassan

This article presents a method for fault detection and diagnosis of stator inter-turn short circuit in three phase induction machines. The technique is based on the stator current and modelling in the dq frame using an Adaptive Neuro-Fuzzy artificial intelligence approach. The developed fault analysis method is illustrated using MATLAB simulations. The obtained results are promising based on the new fault detection approach.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Zaid Nabulsi ◽  
Andrew Sellergren ◽  
Shahar Jamshy ◽  
Charles Lau ◽  
Edward Santos ◽  
...  

AbstractChest radiography (CXR) is the most widely-used thoracic clinical imaging modality and is crucial for guiding the management of cardiothoracic conditions. The detection of specific CXR findings has been the main focus of several artificial intelligence (AI) systems. However, the wide range of possible CXR abnormalities makes it impractical to detect every possible condition by building multiple separate systems, each of which detects one or more pre-specified conditions. In this work, we developed and evaluated an AI system to classify CXRs as normal or abnormal. For training and tuning the system, we used a de-identified dataset of 248,445 patients from a multi-city hospital network in India. To assess generalizability, we evaluated our system using 6 international datasets from India, China, and the United States. Of these datasets, 4 focused on diseases that the AI was not trained to detect: 2 datasets with tuberculosis and 2 datasets with coronavirus disease 2019. Our results suggest that the AI system trained using a large dataset containing a diverse array of CXR abnormalities generalizes to new patient populations and unseen diseases. In a simulated workflow where the AI system prioritized abnormal cases, the turnaround time for abnormal cases reduced by 7–28%. These results represent an important step towards evaluating whether AI can be safely used to flag cases in a general setting where previously unseen abnormalities exist. Lastly, to facilitate the continued development of AI models for CXR, we release our collected labels for the publicly available dataset.


1983 ◽  
Vol 15 (S1) ◽  
pp. 37-42
Author(s):  
A Forester

Measurement of total or nominal pollutant concentration in the physical compartment of the aquatic environment (water, sediments, etc.) seldom gives a valid indication of the ultimate threat to the ecosystem. An alternative is to use a living organis to reflect the biological availability of the contaminant and to integrate its changing levels in the environment by monitoring over an extended period. Pelecypods have been used as indicators of marine coastal pollution, but have received relatively little attention in fresh waters. The large, unionacean clams and mussels show a number of features which suggest that they would be useful as monitors of biological availability of freshwater pollutants: ability to accumulate a wide variety of contaminants; mode of feeding; position on food chain; longevity; sedentary habits; facility with which their age can be determined; abundance; distribution; size and hardiness. The current programme is concerned with: (1) evaluating unionaceans as potential indicators and the factors that affect pollutant uptake; (2) development of the methodology for monitoring; and (3) characterisation of the pollutant status of Ontario shield lakes which are subject to direct inputs of toxic metals with the precipitation and their mobilisation through the ecosystem as a secondary function of environmental acidification.


Author(s):  
Bogdan GEORGESCU ◽  
Daniel MIERLITA ◽  
Danut STRUTI ◽  
Hermina KISS ◽  
Anca BOUARU

Cadmium (Cd) exposure in fish is the result of aquatic pollution with heavy metals, which is mainly caused byanthropic interventions. Rarely, Cd mobilization from natural resources takes place. Bioaccumulation in tissues and organs is a property of this heavy metal, to generate various pathological effects and major risks due to bio-propagation within the human food chain. Wehereby reviewed the main circumstances and levels of exposure to Cd in the aquatic environment, and effects on growth, development and reproduction induced by its bioaccumulation in fish, as well as the possible ramifications for food security in humans. 


2019 ◽  
Vol 112 (3) ◽  
pp. e237-e238
Author(s):  
Matthew David VerMilyea ◽  
Jonathan M. Hall ◽  
Don Perugini ◽  
Andrew P. Murphy ◽  
Tuc Ngyuen ◽  
...  

2019 ◽  
Vol 53 (14) ◽  
pp. 8381-8388 ◽  
Author(s):  
Zuohong Chen ◽  
Xiaoshan Zhu ◽  
Xiaohui Lv ◽  
Yuxiong Huang ◽  
Wei Qian ◽  
...  

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