scholarly journals Tool recommender system in Galaxy using deep learning

2019 ◽  
Author(s):  
Anup Kumar ◽  
Björn Grüning ◽  
Rolf Backofen
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Directed Acyclic Graphs ◽  
Scientific Data ◽  
Multiple User ◽  
Network Training ◽  
The Neural Network ◽  
Acyclic Graphs ◽  
Galaxy Server ◽  
Gated Recurrent Units

AbstractGalaxy is a web-based and open-source scientific data-processing platform. Researchers compose pipelines in Galaxy to analyse scientific data. These pipelines, also known as workflows, can be complex and difficult to create from thousands of tools, especially for researchers new to Galaxy. To make creating workflows easier, faster and less error-prone, a predictive system is developed to recommend tools facilitating further analysis. A model is created to recommend tools by analysing workflows, composed by researchers on the European Galaxy server, using a deep learning approach. The higher-order dependencies in workflows, represented as directed acyclic graphs, are learned by training a gated recurrent units (GRU) neural network, a variant of a recurrent neural network (RNN). The weights of tools used in the neural network training are derived from their usage frequencies over a period of time. The hyper-parameters of the neural network are optimised using Bayesian optimisation. An accuracy of 97% in predicting tools is achieved by the model for precision@1, precision@2 and precision@3 metrics. It is accessed by a Galaxy API to recommend tools in real-time. Multiple user interface (UI) integrations on the server communicate with this API to apprise researchers of these recommended tools [email protected]@[email protected]

scholarly journals Augmented Reality Maintenance Assistant Using YOLOv5

2021 ◽  
Vol 11 (11) ◽  
pp. 4758
Author(s):  
Ana Malta ◽  
Mateus Mendes ◽  
Torres Farinha
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Object Recognition ◽  
Augmented Reality ◽  
Real Time ◽  
Recognition System ◽  
High Accuracy ◽  
Video Streams ◽  
The Neural Network ◽  
Deep Learning Neural Network

Maintenance professionals and other technical staff regularly need to learn to identify new parts in car engines and other equipment. The present work proposes a model of a task assistant based on a deep learning neural network. A YOLOv5 network is used for recognizing some of the constituent parts of an automobile. A dataset of car engine images was created and eight car parts were marked in the images. Then, the neural network was trained to detect each part. The results show that YOLOv5s is able to successfully detect the parts in real time video streams, with high accuracy, thus being useful as an aid to train professionals learning to deal with new equipment using augmented reality. The architecture of an object recognition system using augmented reality glasses is also designed.

Self-validating deep learning of continental hydrology through satellite gravimetry and altimetry

2021 ◽  
Author(s):  
Christopher Irrgang ◽  
Jan Saynisch-Wagner ◽  
Robert Dill ◽  
Eva Boergens ◽  
Maik Thomas
Keyword(s):  
Neural Network ◽  
Satellite Altimetry ◽  
Water Cycle ◽  
Global Water Cycle ◽  
Network Training ◽  
The Neural Network ◽  
Continental Hydrology ◽  
Terrestrial Water ◽  
Combine Machine ◽  
Groundwater Basins

<p>Space-borne observations of terrestrial water storage (TWS) are an essential ingredient for understanding the Earth's global water cycle, its susceptibility to climate change, and for risk assessments of ecosystems, agriculture, and water management. However, the complex distribution of water masses in rivers, lakes, or groundwater basins remains elusive in coarse-resolution gravimetry observations. We combine machine learning, numerical modeling, and satellite altimetry to build and train a downscaling neural network that recovers simulated TWS from synthetic space-borne gravity observations. The neural network is designed to adapt and validate its training progress by considering independent satellite altimetry records. We show that the neural network can accurately derive TWS anomalies in 2019 after being trained over the years 2003 to 2018. Specifically for validated regions in the Amazonas, we highlight that the neural network can outperform the numerical hydrology model used in the network training.</p><p>https://agupubs.onlinelibrary.wiley.com/doi/10.1029/2020GL089258</p>

scholarly journals Neutrosophy for physiological data compression: in particular by neural nets using deep learning

2020 ◽  
pp. 74-80
Author(s):  
Philippe Schweizer ◽  
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Boundary Surface ◽  
Human Perception ◽  
Neural Nets ◽  
Physiological Data ◽  
Compression Process ◽  
The Neural Network ◽  
Algorithmic Solution ◽  
Algorithmic Techniques

We would like to show the small distance in neutropsophy applications in sciences and humanities, has both finally consider as a terminal user a human. The pace of data production continues to grow, leading to increased needs for efficient storage and transmission. Indeed, the consumption of this information is preferably made on mobile terminals using connections invoiced to the user and having only reduced storage capacities. Deep learning neural networks have recently exceeded the compression rates of algorithmic techniques for text. We believe that they can also significantly challenge classical methods for both audio and visual data (images and videos). To obtain the best physiological compression, i.e. the highest compression ratio because it comes closest to the specificity of human perception, we propose using a neutrosophical representation of the information for the entire compression-decompression cycle. Such a representation consists for each elementary information to add to it a simple neutrosophical number which informs the neural network about its characteristics relative to compression during this treatment. Such a neutrosophical number is in fact a triplet (t,i,f) representing here the belonging of the element to the three constituent components of information in compression; 1° t = the true significant part to be preserved, 2° i = the inderterminated redundant part or noise to be eliminated in compression and 3° f = the false artifacts being produced in the compression process (to be compensated). The complexity of human perception and the subtle niches of its defects that one seeks to exploit requires a detailed and complex mapping that a neural network can produce better than any other algorithmic solution, and networks with deep learning have proven their ability to produce a detailed boundary surface in classifiers.

scholarly journals Is the Skip Connection Provable to Reform the Neural Network Loss Landscape?

2020 ◽  
Author(s):  
Lifu Wang ◽  
Bo Shen ◽  
Ning Zhao ◽  
Zhiyuan Zhang
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Level Sets ◽  
Theoretical Explanation ◽  
Learning Ability ◽  
Local Minima ◽  
Global Minima ◽  
Residual Network ◽  
The Neural Network ◽  
Hidden Nodes

The residual network is now one of the most effective structures in deep learning, which utilizes the skip connections to “guarantee" the performance will not get worse. However, the non-convexity of the neural network makes it unclear whether the skip connections do provably improve the learning ability since the nonlinearity may create many local minima. In some previous works [Freeman and Bruna, 2016], it is shown that despite the non-convexity, the loss landscape of the two-layer ReLU network has good properties when the number m of hidden nodes is very large. In this paper, we follow this line to study the topology (sub-level sets) of the loss landscape of deep ReLU neural networks with a skip connection and theoretically prove that the skip connection network inherits the good properties of the two-layer network and skip connections can help to control the connectedness of the sub-level sets, such that any local minima worse than the global minima of some two-layer ReLU network will be very “shallow". The “depth" of these local minima are at most O(m^(η-1)/n), where n is the input dimension, η<1. This provides a theoretical explanation for the effectiveness of the skip connection in deep learning.

scholarly journals Sub3DNet1.0: a deep-learning model for regional-scale 3D subsurface structure mapping

2021 ◽  
Vol 14 (6) ◽  
pp. 3421-3435
Author(s):  
Zhenjiao Jiang ◽  
Dirk Mallants ◽  
Lei Gao ◽  
Tim Munday ◽  
Gregoire Mariethoz ◽  
...  
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Land Surface ◽  
Regional Scale ◽  
Learning Model ◽  
Generic Structure ◽  
Squared Error ◽  
The Neural Network ◽  
Deep Learning Model ◽  
Surface Observations

Abstract. This study introduces an efficient deep-learning model based on convolutional neural networks with joint autoencoder and adversarial structures for 3D subsurface mapping from 2D surface observations. The method was applied to delineate paleovalleys in an Australian desert landscape. The neural network was trained on a 6400 km2 domain by using a land surface topography as 2D input and an airborne electromagnetic (AEM)-derived probability map of paleovalley presence as 3D output. The trained neural network has a squared error <0.10 across 99 % of the training domain and produces a squared error <0.10 across 93 % of the validation domain, demonstrating that it is reliable in reconstructing 3D paleovalley patterns beyond the training area. Due to its generic structure, the neural network structure designed in this study and the training algorithm have broad application potential to construct 3D geological features (e.g., ore bodies, aquifer) from 2D land surface observations.

Research on the Optimized Algorithms on Neural Network

2012 ◽  
Vol 605-607 ◽  
pp. 2175-2178
Author(s):  
Xiao Qin Wu
Keyword(s):  
Neural Network ◽  
Bp Neural Network ◽  
Simulated Annealing Algorithm ◽  
Fitness Function ◽  
Strong Stability ◽  
Training Algorithm ◽  
Network Training ◽  
The Neural Network ◽  
Annealing Algorithm ◽  
Proper Operation

In order to overcome the disadvantage of neural networks that their structure and parameters were decided stochastically or by one’s experience, an improved BP neural network training algorithm based on genetic algorithm was proposed.In this paper,genetic algorithms and simulated annealing algorithm that optimizes neural network is proposed which is used to scale the fitness function and select the proper operation according to the expected value in the course of optimization,and the weights and thresholds of the neural network is optimized. This method is applied to the stock prediction system.The experimental results show that the proposed approach have high accuracy,strong stability and improved confidence.

Pattern-Based Deep Learning Method to Extract Information from the Log Dataset

2021 ◽  
pp. 2150296
Author(s):  
Xi Li ◽  
Ting Wang ◽  
Shexiong Wang
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Data Sets ◽  
Learning Method ◽  
Statistical Features ◽  
Log Data ◽  
The Neural Network ◽  
Testing Data ◽  
Extract Information

It draws researchers’ attentions how to make use of the log data effectively without paying much for storing them. In this paper, we propose pattern-based deep learning method to extract the features from log datasets and to facilitate its further use at the reasonable expense of the storage performances. By taking the advantages of the neural network and thoughts to combine statistical features with experts’ knowledge, there are satisfactory results in the experiments on some specified datasets and on the routine systems that our group maintains. Processed on testing data sets, the model is 5%, at least, more likely to outperform its competitors in accuracy perspective. More importantly, its schema unveils a new way to mingle experts’ experiences with statistical log parser.

scholarly journals Deep-Learning-Based Neural Network Training for State Estimation Enhancement: Application to Attitude Estimation

2020 ◽  
Vol 69 (1) ◽  
pp. 24-34 ◽  
Author(s):  
Mohammad K. Al-Sharman ◽  
Yahya Zweiri ◽  
Mohammad Abdel Kareem Jaradat ◽  
Raghad Al-Husari ◽  
Dongming Gan ◽  
...  
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
State Estimation ◽  
Attitude Estimation ◽  
Neural Network Training ◽  
Network Training

scholarly journals Modeling a Thermochemical Reactor of a Solar Refrigerator by BaCl2-NH3 Sorption Using Artificial Neural Networks and Mathematical Symmetry Groups

2020 ◽  
Vol 2020 ◽  
pp. 1-11
Author(s):  
Onesimo Meza-Cruz ◽  
Isaac Pilatowsky ◽  
Agustín Pérez-Ramírez ◽  
Carlos Rivera-Blanco ◽  
Youness El Hamzaoui ◽  
...  
Keyword(s):  
Neural Network ◽  
Experimental Data ◽  
Neural Networks ◽  
Heating Temperature ◽  
Barium Chloride ◽  
Symmetry Groups ◽  
Solar Cooling ◽  
Network Training ◽  
The Neural Network ◽  
Marquardt Algorithm

The aim of this work is to present a model for heat transfer, desorbed refrigerant, and pressure of an intermittent solar cooling system’s thermochemical reactor based on backpropagation neural networks and mathematical symmetry groups. In order to achieve this, a reactor was designed and built based on the reaction of BaCl2-NH3. Experimental data from this reactor were collected, where barium chloride was used as a solid absorbent and ammonia as a refrigerant. The neural network was trained using the Levenberg–Marquardt algorithm. The correlation coefficient between experimental data and data simulated by the neural network was r = 0.9957. In the neural network’s sensitivity analysis, it was found that the inputs, reactor’s heating temperature and sorption time, influence neural network’s learning by 35% and 20%, respectively. It was also found that, by applying permutations to experimental data and using multibase mathematical symmetry groups, the neural network training algorithm converges faster.

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